miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 48713 0.66 0.556993
Target:  5'- gCGGCGGCccugccAGCGCuuGCCGGUGGCgaugUGGc -3'
miRNA:   3'- -GUUGUCG------UCGCG--CGGCUACCGga--GCC- -5'
18978 3' -58.7 NC_004684.1 + 63511 0.66 0.556993
Target:  5'- cCAGCagGGCGGCcugGCGUCGcagcucgcgggcGUGGCgCUCGGc -3'
miRNA:   3'- -GUUG--UCGUCG---CGCGGC------------UACCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 57159 0.66 0.556993
Target:  5'- uGGCGGCGGUG-GCCGAcGcGCacgCUCGGg -3'
miRNA:   3'- gUUGUCGUCGCgCGGCUaC-CG---GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 4885 0.66 0.555953
Target:  5'- aGGCGGCucaGGCG-GCCuGGUcgccaccGGCCUCGGc -3'
miRNA:   3'- gUUGUCG---UCGCgCGG-CUA-------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 44975 0.67 0.55076
Target:  5'- gCGACGcCAGCGCgauGCUGAUuucaucgcucaggcgGGCCUUGGu -3'
miRNA:   3'- -GUUGUcGUCGCG---CGGCUA---------------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 13018 0.67 0.546617
Target:  5'- cCGACGGCGGCGaaguugGCCGAcGGCgcacCGGc -3'
miRNA:   3'- -GUUGUCGUCGCg-----CGGCUaCCGga--GCC- -5'
18978 3' -58.7 NC_004684.1 + 40701 0.67 0.546617
Target:  5'- aCuuCAGCuGgGCGgCGGUGGCCg-GGa -3'
miRNA:   3'- -GuuGUCGuCgCGCgGCUACCGGagCC- -5'
18978 3' -58.7 NC_004684.1 + 32418 0.67 0.546617
Target:  5'- aCAGCAGCggcaccucgGGCGUGgCGAUGcaCCUCGa -3'
miRNA:   3'- -GUUGUCG---------UCGCGCgGCUACc-GGAGCc -5'
18978 3' -58.7 NC_004684.1 + 63776 0.67 0.536304
Target:  5'- cCGACAGCAGgGUGaa---GGCCUUGGc -3'
miRNA:   3'- -GUUGUCGUCgCGCggcuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 66309 0.67 0.536304
Target:  5'- aCGGCAGCGGCGCGUa-GUaGCgCUCGa -3'
miRNA:   3'- -GUUGUCGUCGCGCGgcUAcCG-GAGCc -5'
18978 3' -58.7 NC_004684.1 + 60626 0.67 0.536304
Target:  5'- uCGACGGCaccgGGCGCGgCGAgaucaGCCUgCGGu -3'
miRNA:   3'- -GUUGUCG----UCGCGCgGCUac---CGGA-GCC- -5'
18978 3' -58.7 NC_004684.1 + 28037 0.67 0.536304
Target:  5'- cCGGCAG-AGCGCgagaucauGCCGGUGGUCggccccggCGGu -3'
miRNA:   3'- -GUUGUCgUCGCG--------CGGCUACCGGa-------GCC- -5'
18978 3' -58.7 NC_004684.1 + 67058 0.67 0.533222
Target:  5'- -cGCAcGCuuCGCGCCGuAcccggugcgggcguUGGCCUCGGc -3'
miRNA:   3'- guUGU-CGucGCGCGGC-U--------------ACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 749 0.67 0.526058
Target:  5'- -cGCAcGCugucguGCGCGUCGGUGuCCUUGGg -3'
miRNA:   3'- guUGU-CGu-----CGCGCGGCUACcGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 25592 0.67 0.526058
Target:  5'- gAACAGCcGCuCGCCGGucgccUGGCCcUGGu -3'
miRNA:   3'- gUUGUCGuCGcGCGGCU-----ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 15953 0.67 0.526058
Target:  5'- uGGCGGCcaCGUGCuCGAUGaCCUCGGc -3'
miRNA:   3'- gUUGUCGucGCGCG-GCUACcGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 52810 0.67 0.525038
Target:  5'- gGACAGCgccuacgAGCGUGgCGA-GGCCgaCGGg -3'
miRNA:   3'- gUUGUCG-------UCGCGCgGCUaCCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 41307 0.67 0.515888
Target:  5'- cCAGCAGCucGCGCaCCGcUGGCgUCuGGu -3'
miRNA:   3'- -GUUGUCGu-CGCGcGGCuACCGgAG-CC- -5'
18978 3' -58.7 NC_004684.1 + 16374 0.67 0.515888
Target:  5'- aCGACAGUGaaGCGCCGcgucgGGCC-CGGc -3'
miRNA:   3'- -GUUGUCGUcgCGCGGCua---CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 63372 0.67 0.515888
Target:  5'- gAGCGGCcgacGCGCcaGCCGAUGGCggcguagCGGu -3'
miRNA:   3'- gUUGUCGu---CGCG--CGGCUACCGga-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.