miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 53272 0.66 0.577905
Target:  5'- --cCAGCGGCGCGgucggccuguccCCGGaGGCCUucacgcCGGa -3'
miRNA:   3'- guuGUCGUCGCGC------------GGCUaCCGGA------GCC- -5'
18978 3' -58.7 NC_004684.1 + 59634 0.66 0.577905
Target:  5'- aCAACGGC-GCGCGCUGgcGGUgcaGGa -3'
miRNA:   3'- -GUUGUCGuCGCGCGGCuaCCGgagCC- -5'
18978 3' -58.7 NC_004684.1 + 60274 0.66 0.577905
Target:  5'- uCGGCGGUGGCG-GuuGcGUGGCC-CGGu -3'
miRNA:   3'- -GUUGUCGUCGCgCggC-UACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 444 0.66 0.577905
Target:  5'- gGACAccGCuGCGCGCaucGUGGCCgUGGa -3'
miRNA:   3'- gUUGU--CGuCGCGCGgc-UACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 46289 0.66 0.577905
Target:  5'- gCGGCGGCcgAGCGCGuuGc-GGCgCUUGGc -3'
miRNA:   3'- -GUUGUCG--UCGCGCggCuaCCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 25783 0.66 0.574756
Target:  5'- cCAcCGGCGGCaCGCCGGuguucgucaccaacUGGCCggguggCGGc -3'
miRNA:   3'- -GUuGUCGUCGcGCGGCU--------------ACCGGa-----GCC- -5'
18978 3' -58.7 NC_004684.1 + 25402 0.66 0.571611
Target:  5'- aCAGCGGCGGCcaguaccaaugggguGCcuccgaccuuGCCGcUGGCCugUCGGa -3'
miRNA:   3'- -GUUGUCGUCG---------------CG----------CGGCuACCGG--AGCC- -5'
18978 3' -58.7 NC_004684.1 + 22274 0.66 0.567425
Target:  5'- cCGAaGGCGGuCGcCGCCGccGUGGCCcugCGGu -3'
miRNA:   3'- -GUUgUCGUC-GC-GCGGC--UACCGGa--GCC- -5'
18978 3' -58.7 NC_004684.1 + 10587 0.66 0.567425
Target:  5'- uCGGCGGCccAGUGCGUCGGccgGGUCUUGc -3'
miRNA:   3'- -GUUGUCG--UCGCGCGGCUa--CCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 57916 0.66 0.567425
Target:  5'- cCGGCGGcCAGCacCGCCGGgaccaGGCCguggUCGGg -3'
miRNA:   3'- -GUUGUC-GUCGc-GCGGCUa----CCGG----AGCC- -5'
18978 3' -58.7 NC_004684.1 + 7377 0.66 0.567425
Target:  5'- -uGguGCAGUGCGgCGAugaacUGGUCUCGc -3'
miRNA:   3'- guUguCGUCGCGCgGCU-----ACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 13969 0.66 0.567425
Target:  5'- uGACGGCAGuCGCGCgGcgcaGGCCagccCGGc -3'
miRNA:   3'- gUUGUCGUC-GCGCGgCua--CCGGa---GCC- -5'
18978 3' -58.7 NC_004684.1 + 40458 0.66 0.567425
Target:  5'- aGGCGGCcGCcUGCuCGggGGUCUCGGc -3'
miRNA:   3'- gUUGUCGuCGcGCG-GCuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 16591 0.66 0.567425
Target:  5'- -cGCcGcCAGCGUcuGCUGGUGGCCUCc- -3'
miRNA:   3'- guUGuC-GUCGCG--CGGCUACCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 58503 0.66 0.566379
Target:  5'- gCAACGGCGGgGUuccggcgGCCGGgccaaGGCCUCc- -3'
miRNA:   3'- -GUUGUCGUCgCG-------CGGCUa----CCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 57159 0.66 0.556993
Target:  5'- uGGCGGCGGUG-GCCGAcGcGCacgCUCGGg -3'
miRNA:   3'- gUUGUCGUCGCgCGGCUaC-CG---GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 13647 0.66 0.556993
Target:  5'- uCGAC-GCAGUa-GCCGAUGGCCgccaGGc -3'
miRNA:   3'- -GUUGuCGUCGcgCGGCUACCGGag--CC- -5'
18978 3' -58.7 NC_004684.1 + 60707 0.66 0.556993
Target:  5'- gCAugGGCGacGUGCGCCGGgugaccGGCCUgCGc -3'
miRNA:   3'- -GUugUCGU--CGCGCGGCUa-----CCGGA-GCc -5'
18978 3' -58.7 NC_004684.1 + 14672 0.66 0.556993
Target:  5'- aGGCGGUAG-GCG-UGAacGGCCUCGGa -3'
miRNA:   3'- gUUGUCGUCgCGCgGCUa-CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 3155 0.66 0.556993
Target:  5'- gAGCGGgggucgaucauCGGCGCGCCaccacccgGGCCUCGu -3'
miRNA:   3'- gUUGUC-----------GUCGCGCGGcua-----CCGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.