miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 9905 0.7 0.351345
Target:  5'- aGACGGUGGCcuugaGCGUCGGgugccaccggcgcagGGCCUCGGc -3'
miRNA:   3'- gUUGUCGUCG-----CGCGGCUa--------------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 10073 0.7 0.383933
Target:  5'- gCAACGGgaugccgAGCGCGUCGAaGGCCUCc- -3'
miRNA:   3'- -GUUGUCg------UCGCGCGGCUaCCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 10587 0.66 0.567425
Target:  5'- uCGGCGGCccAGUGCGUCGGccgGGUCUUGc -3'
miRNA:   3'- -GUUGUCG--UCGCGCGGCUa--CCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 10692 0.7 0.383933
Target:  5'- gCAACGGCAguugcgcaccucGCGCGCCGAaccaGCCggaUCGGc -3'
miRNA:   3'- -GUUGUCGU------------CGCGCGGCUac--CGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 11716 0.71 0.334629
Target:  5'- cCGACGGUcaGGCG-GCCGAcGGCCagcUCGGu -3'
miRNA:   3'- -GUUGUCG--UCGCgCGGCUaCCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 11903 0.81 0.062976
Target:  5'- gGACAGCGGCGCGCucgcgcccuucuccaCGGUGGCCuggUCGGc -3'
miRNA:   3'- gUUGUCGUCGCGCG---------------GCUACCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 12827 0.71 0.334629
Target:  5'- gGACGGCGGCucuGCuGCCGAcgUGGUCgCGGa -3'
miRNA:   3'- gUUGUCGUCG---CG-CGGCU--ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 12910 0.68 0.436888
Target:  5'- cCAGCGGUgccGGUGCGCCGucGGCCaacuucgccgccgUCGGc -3'
miRNA:   3'- -GUUGUCG---UCGCGCGGCuaCCGG-------------AGCC- -5'
18978 3' -58.7 NC_004684.1 + 12913 0.67 0.505798
Target:  5'- uCGGCAGCAGaGcCGCCGu---CCUCGGg -3'
miRNA:   3'- -GUUGUCGUCgC-GCGGCuaccGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 12958 0.75 0.166107
Target:  5'- cCGGCGGCGGCcucgGCGgUGgcGGCCUCGGc -3'
miRNA:   3'- -GUUGUCGUCG----CGCgGCuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 13018 0.67 0.546617
Target:  5'- cCGACGGCGGCGaaguugGCCGAcGGCgcacCGGc -3'
miRNA:   3'- -GUUGUCGUCGCg-----CGGCUaCCGga--GCC- -5'
18978 3' -58.7 NC_004684.1 + 13263 0.78 0.114226
Target:  5'- uGACcGcCAGCGCGCUGGUGGCCgcCGGu -3'
miRNA:   3'- gUUGuC-GUCGCGCGGCUACCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 13357 0.73 0.250387
Target:  5'- cCGGCGGCcaccAGCGCGCUGGcggucacggccUGGCCaCGGa -3'
miRNA:   3'- -GUUGUCG----UCGCGCGGCU-----------ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 13647 0.66 0.556993
Target:  5'- uCGAC-GCAGUa-GCCGAUGGCCgccaGGc -3'
miRNA:   3'- -GUUGuCGUCGcgCGGCUACCGGag--CC- -5'
18978 3' -58.7 NC_004684.1 + 13969 0.66 0.567425
Target:  5'- uGACGGCAGuCGCGCgGcgcaGGCCagccCGGc -3'
miRNA:   3'- gUUGUCGUC-GCGCGgCua--CCGGa---GCC- -5'
18978 3' -58.7 NC_004684.1 + 14360 0.69 0.432238
Target:  5'- cCGACAacGCgaccaucaagAGCGCGCUGGUGGCgcuggacgacgguuaCUCGGc -3'
miRNA:   3'- -GUUGU--CG----------UCGCGCGGCUACCG---------------GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 14672 0.66 0.556993
Target:  5'- aGGCGGUAG-GCG-UGAacGGCCUCGGa -3'
miRNA:   3'- gUUGUCGUCgCGCgGCUa-CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 15172 0.7 0.358689
Target:  5'- gGGCGGCcacCGCGCCGAUaaGGCCgUCGa -3'
miRNA:   3'- gUUGUCGuc-GCGCGGCUA--CCGG-AGCc -5'
18978 3' -58.7 NC_004684.1 + 15791 0.7 0.342516
Target:  5'- cCGGgAGCA-CGaUGCCGGUGGCgUCGGu -3'
miRNA:   3'- -GUUgUCGUcGC-GCGGCUACCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 15953 0.67 0.526058
Target:  5'- uGGCGGCcaCGUGCuCGAUGaCCUCGGc -3'
miRNA:   3'- gUUGUCGucGCGCG-GCUACcGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.