miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 444 0.66 0.577905
Target:  5'- gGACAccGCuGCGCGCaucGUGGCCgUGGa -3'
miRNA:   3'- gUUGU--CGuCGCGCGgc-UACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 671 0.7 0.375388
Target:  5'- aCGACAGC-GUGCGCCuGAU--CCUCGGc -3'
miRNA:   3'- -GUUGUCGuCGCGCGG-CUAccGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 749 0.67 0.526058
Target:  5'- -cGCAcGCugucguGCGCGUCGGUGuCCUUGGg -3'
miRNA:   3'- guUGU-CGu-----CGCGCGGCUACcGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 1202 0.7 0.365306
Target:  5'- -uACGGCaAGCGCGgCGucgacuucgucGGCCUCGGc -3'
miRNA:   3'- guUGUCG-UCGCGCgGCua---------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 3044 1.09 0.0006
Target:  5'- gCAACAGCAGCGCGCCGAUGGCCUCGGu -3'
miRNA:   3'- -GUUGUCGUCGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 3083 0.76 0.157572
Target:  5'- -uGCA-CGGCGCGgUGAUGGCCUCGa -3'
miRNA:   3'- guUGUcGUCGCGCgGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 3155 0.66 0.556993
Target:  5'- gAGCGGgggucgaucauCGGCGCGCCaccacccgGGCCUCGu -3'
miRNA:   3'- gUUGUC-----------GUCGCGCGGcua-----CCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 3364 0.68 0.447218
Target:  5'- cCGGCAGCAGUGCGUccaCGAUguccGGCCa-GGc -3'
miRNA:   3'- -GUUGUCGUCGCGCG---GCUA----CCGGagCC- -5'
18978 3' -58.7 NC_004684.1 + 3499 0.71 0.304421
Target:  5'- cCAGCGGUgccAGgGUGCCGuUGGUCUCGa -3'
miRNA:   3'- -GUUGUCG---UCgCGCGGCuACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 3945 0.74 0.199323
Target:  5'- -cGCAGCGGCGUGCCuucgguGUGGUCgUCGGu -3'
miRNA:   3'- guUGUCGUCGCGCGGc-----UACCGG-AGCC- -5'
18978 3' -58.7 NC_004684.1 + 4552 0.7 0.383933
Target:  5'- aCGACGGCcucGCGCGCaCGugcGGCCUCc- -3'
miRNA:   3'- -GUUGUCGu--CGCGCG-GCua-CCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 4656 0.89 0.016435
Target:  5'- -uGCAGCAGCGCcUCGAUGGCCUCGGc -3'
miRNA:   3'- guUGUCGUCGCGcGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 4885 0.66 0.555953
Target:  5'- aGGCGGCucaGGCG-GCCuGGUcgccaccGGCCUCGGc -3'
miRNA:   3'- gUUGUCG---UCGCgCGG-CUA-------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 5320 0.69 0.410327
Target:  5'- --uCGGCcGCGCGCgGAcaccaUGGCCUCa- -3'
miRNA:   3'- guuGUCGuCGCGCGgCU-----ACCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 5660 0.66 0.598984
Target:  5'- aGGCGGCGGUGgagaagcacaaCGCCGGUGGCaUCc- -3'
miRNA:   3'- gUUGUCGUCGC-----------GCGGCUACCGgAGcc -5'
18978 3' -58.7 NC_004684.1 + 6176 0.68 0.479976
Target:  5'- gCGGCGGUAG-GCaccgggcagguacauGUCGAUGGCCUcCGGc -3'
miRNA:   3'- -GUUGUCGUCgCG---------------CGGCUACCGGA-GCC- -5'
18978 3' -58.7 NC_004684.1 + 7377 0.66 0.567425
Target:  5'- -uGguGCAGUGCGgCGAugaacUGGUCUCGc -3'
miRNA:   3'- guUguCGUCGCGCgGCU-----ACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 7830 0.74 0.209825
Target:  5'- aCGACAGCGGCGCGgCGAuaccgaucaggUGGCUcaCGGc -3'
miRNA:   3'- -GUUGUCGUCGCGCgGCU-----------ACCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 8589 0.78 0.114226
Target:  5'- ---gAGCAugaaCGCGCCGGUGGCCUCGa -3'
miRNA:   3'- guugUCGUc---GCGCGGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 9085 0.69 0.427617
Target:  5'- gCAuCAGCAccGUGCGCagcaccugguucgUGAUGGCCUCGc -3'
miRNA:   3'- -GUuGUCGU--CGCGCG-------------GCUACCGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.