miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 22185 0.72 0.261168
Target:  5'- aCGGCGGCGGCGacCGCCuucggacuggcgcaGGUGGCCUCc- -3'
miRNA:   3'- -GUUGUCGUCGC--GCGG--------------CUACCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 37539 0.73 0.238177
Target:  5'- -uGCGGCGGCGaugaccCGCCGGUGGaCC-CGGu -3'
miRNA:   3'- guUGUCGUCGC------GCGGCUACC-GGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 49181 0.73 0.238177
Target:  5'- uCGGCGGCGGCgGCGgCGgcGGCCugcUCGGu -3'
miRNA:   3'- -GUUGUCGUCG-CGCgGCuaCCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 58385 0.73 0.238177
Target:  5'- -cACGGCAccGCGCGUgGA-GGCCUUGGc -3'
miRNA:   3'- guUGUCGU--CGCGCGgCUaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 61568 0.73 0.238177
Target:  5'- gCGGCAGCAcucGCGCaGCUGGgacGCCUCGGu -3'
miRNA:   3'- -GUUGUCGU---CGCG-CGGCUac-CGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 63583 0.73 0.244219
Target:  5'- uCGGCcugcGCGGCGCGgCGGUGguuaccGCCUCGGa -3'
miRNA:   3'- -GUUGu---CGUCGCGCgGCUAC------CGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 56395 0.73 0.250387
Target:  5'- gGACAuGCAGCGCGCCaacuaccgGGCCaugcucUCGGg -3'
miRNA:   3'- gUUGU-CGUCGCGCGGcua-----CCGG------AGCC- -5'
18978 3' -58.7 NC_004684.1 + 58092 0.73 0.250387
Target:  5'- uCGAcCGGgAGCGCGCCGAgcaUGGCCg-GGu -3'
miRNA:   3'- -GUU-GUCgUCGCGCGGCU---ACCGGagCC- -5'
18978 3' -58.7 NC_004684.1 + 65573 0.72 0.256683
Target:  5'- -cGCAGguCAGC-CGCC-AUGGCCUCGGu -3'
miRNA:   3'- guUGUC--GUCGcGCGGcUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 62949 0.74 0.215253
Target:  5'- -cGCGGC-GCGCGCCGAcgauggUGGCgugCUCGGu -3'
miRNA:   3'- guUGUCGuCGCGCGGCU------ACCG---GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 49499 0.74 0.215253
Target:  5'- -uGCAGCGGCGCGUCGggGGUguagCGGc -3'
miRNA:   3'- guUGUCGUCGCGCGGCuaCCGga--GCC- -5'
18978 3' -58.7 NC_004684.1 + 26829 0.74 0.204516
Target:  5'- aCGACAcCAGCGCGCUGGUGGaCCggUCGa -3'
miRNA:   3'- -GUUGUcGUCGCGCGGCUACC-GG--AGCc -5'
18978 3' -58.7 NC_004684.1 + 13263 0.78 0.114226
Target:  5'- uGACcGcCAGCGCGCUGGUGGCCgcCGGu -3'
miRNA:   3'- gUUGuC-GUCGCGCGGCUACCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 8589 0.78 0.114226
Target:  5'- ---gAGCAugaaCGCGCCGGUGGCCUCGa -3'
miRNA:   3'- guugUCGUc---GCGCGGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 33290 0.78 0.114226
Target:  5'- aCAGCAGguGgugcuCGCGCgGGUGGCCUCGc -3'
miRNA:   3'- -GUUGUCguC-----GCGCGgCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 26424 0.77 0.120584
Target:  5'- uGGCAGCGGgguuCGcCGCCGGUGGCC-CGGu -3'
miRNA:   3'- gUUGUCGUC----GC-GCGGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 49538 0.77 0.137944
Target:  5'- --cCGGCGGUGUGCgCGGUGGCCgacuUCGGg -3'
miRNA:   3'- guuGUCGUCGCGCG-GCUACCGG----AGCC- -5'
18978 3' -58.7 NC_004684.1 + 40117 0.75 0.170529
Target:  5'- --gUAGCGG-GCGCUGgcGGCCUCGGc -3'
miRNA:   3'- guuGUCGUCgCGCGGCuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 18563 0.75 0.174598
Target:  5'- gCGACGGCGGCcgaggucaagaccGCGCUGGUGGCUcUGGa -3'
miRNA:   3'- -GUUGUCGUCG-------------CGCGGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 45209 0.75 0.175055
Target:  5'- cCAGCGGCAGCGCGUCcAUgcGGCgCUUGGu -3'
miRNA:   3'- -GUUGUCGUCGCGCGGcUA--CCG-GAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.