miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 66700 0.66 0.556993
Target:  5'- cCGGCGGCGGUcuuGCGCUGcgcGGCgaaCUCGGu -3'
miRNA:   3'- -GUUGUCGUCG---CGCGGCua-CCG---GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 57159 0.66 0.556993
Target:  5'- uGGCGGCGGUG-GCCGAcGcGCacgCUCGGg -3'
miRNA:   3'- gUUGUCGUCGCgCGGCUaC-CG---GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 48713 0.66 0.556993
Target:  5'- gCGGCGGCccugccAGCGCuuGCCGGUGGCgaugUGGc -3'
miRNA:   3'- -GUUGUCG------UCGCG--CGGCUACCGga--GCC- -5'
18978 3' -58.7 NC_004684.1 + 59494 0.66 0.592646
Target:  5'- cCAGCGGCcccaacggagcaccgGGCGCGUCGuaGGCCUgCGc -3'
miRNA:   3'- -GUUGUCG---------------UCGCGCGGCuaCCGGA-GCc -5'
18978 3' -58.7 NC_004684.1 + 46289 0.66 0.577905
Target:  5'- gCGGCGGCcgAGCGCGuuGc-GGCgCUUGGc -3'
miRNA:   3'- -GUUGUCG--UCGCGCggCuaCCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 32672 0.66 0.598984
Target:  5'- uGGCGGCGGCaugGCUac-GGCCUCGGc -3'
miRNA:   3'- gUUGUCGUCGcg-CGGcuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 25402 0.66 0.571611
Target:  5'- aCAGCGGCGGCcaguaccaaugggguGCcuccgaccuuGCCGcUGGCCugUCGGa -3'
miRNA:   3'- -GUUGUCGUCG---------------CG----------CGGCuACCGG--AGCC- -5'
18978 3' -58.7 NC_004684.1 + 13969 0.66 0.567425
Target:  5'- uGACGGCAGuCGCGCgGcgcaGGCCagccCGGc -3'
miRNA:   3'- gUUGUCGUC-GCGCGgCua--CCGGa---GCC- -5'
18978 3' -58.7 NC_004684.1 + 52252 0.66 0.598984
Target:  5'- aCAGCGGCGGUaCGUCGAagcUGGCgUUGu -3'
miRNA:   3'- -GUUGUCGUCGcGCGGCU---ACCGgAGCc -5'
18978 3' -58.7 NC_004684.1 + 48654 0.66 0.598984
Target:  5'- -cGCuGCAcCGCGCCGGagaGGCCUucacCGGg -3'
miRNA:   3'- guUGuCGUcGCGCGGCUa--CCGGA----GCC- -5'
18978 3' -58.7 NC_004684.1 + 63511 0.66 0.556993
Target:  5'- cCAGCagGGCGGCcugGCGUCGcagcucgcgggcGUGGCgCUCGGc -3'
miRNA:   3'- -GUUG--UCGUCG---CGCGGC------------UACCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 18355 0.66 0.609566
Target:  5'- aGGCGGCcgGGCGUGCCGuu-GCCgUCGa -3'
miRNA:   3'- gUUGUCG--UCGCGCGGCuacCGG-AGCc -5'
18978 3' -58.7 NC_004684.1 + 25783 0.66 0.574756
Target:  5'- cCAcCGGCGGCaCGCCGGuguucgucaccaacUGGCCggguggCGGc -3'
miRNA:   3'- -GUuGUCGUCGcGCGGCU--------------ACCGGa-----GCC- -5'
18978 3' -58.7 NC_004684.1 + 38808 0.66 0.577905
Target:  5'- cCAGCGGCGGUGCccgccuggcgguGcCCGAcGGCCUggUGGc -3'
miRNA:   3'- -GUUGUCGUCGCG------------C-GGCUaCCGGA--GCC- -5'
18978 3' -58.7 NC_004684.1 + 27619 0.66 0.598984
Target:  5'- cCAACAGCucaCGCG-UGGUGGCgcacCUCGGu -3'
miRNA:   3'- -GUUGUCGuc-GCGCgGCUACCG----GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 5660 0.66 0.598984
Target:  5'- aGGCGGCGGUGgagaagcacaaCGCCGGUGGCaUCc- -3'
miRNA:   3'- gUUGUCGUCGC-----------GCGGCUACCGgAGcc -5'
18978 3' -58.7 NC_004684.1 + 16591 0.66 0.567425
Target:  5'- -cGCcGcCAGCGUcuGCUGGUGGCCUCc- -3'
miRNA:   3'- guUGuC-GUCGCG--CGGCUACCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 60274 0.66 0.577905
Target:  5'- uCGGCGGUGGCG-GuuGcGUGGCC-CGGu -3'
miRNA:   3'- -GUUGUCGUCGCgCggC-UACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 4885 0.66 0.555953
Target:  5'- aGGCGGCucaGGCG-GCCuGGUcgccaccGGCCUCGGc -3'
miRNA:   3'- gUUGUCG---UCGCgCGG-CUA-------CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 40458 0.66 0.567425
Target:  5'- aGGCGGCcGCcUGCuCGggGGUCUCGGc -3'
miRNA:   3'- gUUGUCGuCGcGCG-GCuaCCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.