miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 3044 1.09 0.0006
Target:  5'- gCAACAGCAGCGCGCCGAUGGCCUCGGu -3'
miRNA:   3'- -GUUGUCGUCGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 4656 0.89 0.016435
Target:  5'- -uGCAGCAGCGCcUCGAUGGCCUCGGc -3'
miRNA:   3'- guUGUCGUCGCGcGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 20887 0.84 0.039718
Target:  5'- -cGCGGCuggcguuGCGUGCCGGUGGCUUCGGg -3'
miRNA:   3'- guUGUCGu------CGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 11903 0.81 0.062976
Target:  5'- gGACAGCGGCGCGCucgcgcccuucuccaCGGUGGCCuggUCGGc -3'
miRNA:   3'- gUUGUCGUCGCGCG---------------GCUACCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 55433 0.78 0.108182
Target:  5'- cCAGCAGC-GUGCGCCGGUGGUCUauGu -3'
miRNA:   3'- -GUUGUCGuCGCGCGGCUACCGGAgcC- -5'
18978 3' -58.7 NC_004684.1 + 33290 0.78 0.114226
Target:  5'- aCAGCAGguGgugcuCGCGCgGGUGGCCUCGc -3'
miRNA:   3'- -GUUGUCguC-----GCGCGgCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 8589 0.78 0.114226
Target:  5'- ---gAGCAugaaCGCGCCGGUGGCCUCGa -3'
miRNA:   3'- guugUCGUc---GCGCGGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 13263 0.78 0.114226
Target:  5'- uGACcGcCAGCGCGCUGGUGGCCgcCGGu -3'
miRNA:   3'- gUUGuC-GUCGCGCGGCUACCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 26424 0.77 0.120584
Target:  5'- uGGCAGCGGgguuCGcCGCCGGUGGCC-CGGu -3'
miRNA:   3'- gUUGUCGUC----GC-GCGGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 49538 0.77 0.137944
Target:  5'- --cCGGCGGUGUGCgCGGUGGCCgacuUCGGg -3'
miRNA:   3'- guuGUCGUCGCGCG-GCUACCGG----AGCC- -5'
18978 3' -58.7 NC_004684.1 + 38177 0.76 0.149434
Target:  5'- cCGACGGCGGUGguuuguacccguCGCCGuugagcuucuUGGCCUCGGg -3'
miRNA:   3'- -GUUGUCGUCGC------------GCGGCu---------ACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 3083 0.76 0.157572
Target:  5'- -uGCA-CGGCGCGgUGAUGGCCUCGa -3'
miRNA:   3'- guUGUcGUCGCGCgGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 12958 0.75 0.166107
Target:  5'- cCGGCGGCGGCcucgGCGgUGgcGGCCUCGGc -3'
miRNA:   3'- -GUUGUCGUCG----CGCgGCuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 40117 0.75 0.170529
Target:  5'- --gUAGCGG-GCGCUGgcGGCCUCGGc -3'
miRNA:   3'- guuGUCGUCgCGCGGCuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 18563 0.75 0.174598
Target:  5'- gCGACGGCGGCcgaggucaagaccGCGCUGGUGGCUcUGGa -3'
miRNA:   3'- -GUUGUCGUCG-------------CGCGGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 45209 0.75 0.175055
Target:  5'- cCAGCGGCAGCGCGUCcAUgcGGCgCUUGGu -3'
miRNA:   3'- -GUUGUCGUCGCGCGGcUA--CCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 26512 0.75 0.17922
Target:  5'- cCGGCGGCgaaccccgcugccAGCGCGCCGGUGGCggCGu -3'
miRNA:   3'- -GUUGUCG-------------UCGCGCGGCUACCGgaGCc -5'
18978 3' -58.7 NC_004684.1 + 51906 0.75 0.18443
Target:  5'- cCAGC-GCAGCGCGCgCGGccUGGCCgUGGa -3'
miRNA:   3'- -GUUGuCGUCGCGCG-GCU--ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 23052 0.74 0.199323
Target:  5'- uGGCGGCguuGGCGCGCUucUGGCCUuCGGc -3'
miRNA:   3'- gUUGUCG---UCGCGCGGcuACCGGA-GCC- -5'
18978 3' -58.7 NC_004684.1 + 3945 0.74 0.199323
Target:  5'- -cGCAGCGGCGUGCCuucgguGUGGUCgUCGGu -3'
miRNA:   3'- guUGUCGUCGCGCGGc-----UACCGG-AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.