miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 3044 1.09 0.0006
Target:  5'- gCAACAGCAGCGCGCCGAUGGCCUCGGu -3'
miRNA:   3'- -GUUGUCGUCGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 42604 0.72 0.263109
Target:  5'- aCGGCGGUgAGCGCGCCGuugaucgcguUGGCCU-GGu -3'
miRNA:   3'- -GUUGUCG-UCGCGCGGCu---------ACCGGAgCC- -5'
18978 3' -58.7 NC_004684.1 + 3499 0.71 0.304421
Target:  5'- cCAGCGGUgccAGgGUGCCGuUGGUCUCGa -3'
miRNA:   3'- -GUUGUCG---UCgCGCGGCuACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 18355 0.66 0.609566
Target:  5'- aGGCGGCcgGGCGUGCCGuu-GCCgUCGa -3'
miRNA:   3'- gUUGUCG--UCGCGCGGCuacCGG-AGCc -5'
18978 3' -58.7 NC_004684.1 + 38177 0.76 0.149434
Target:  5'- cCGACGGCGGUGguuuguacccguCGCCGuugagcuucuUGGCCUCGGg -3'
miRNA:   3'- -GUUGUCGUCGC------------GCGGCu---------ACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 3083 0.76 0.157572
Target:  5'- -uGCA-CGGCGCGgUGAUGGCCUCGa -3'
miRNA:   3'- guUGUcGUCGCGCgGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 26512 0.75 0.17922
Target:  5'- cCGGCGGCgaaccccgcugccAGCGCGCCGGUGGCggCGu -3'
miRNA:   3'- -GUUGUCG-------------UCGCGCGGCUACCGgaGCc -5'
18978 3' -58.7 NC_004684.1 + 51906 0.75 0.18443
Target:  5'- cCAGC-GCAGCGCGCgCGGccUGGCCgUGGa -3'
miRNA:   3'- -GUUGuCGUCGCGCG-GCU--ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 37282 0.74 0.202946
Target:  5'- cCAGCAGCuggccgcGCGCGUCGAugcucggcgcgacgUGGCCcUCGGc -3'
miRNA:   3'- -GUUGUCGu------CGCGCGGCU--------------ACCGG-AGCC- -5'
18978 3' -58.7 NC_004684.1 + 13357 0.73 0.250387
Target:  5'- cCGGCGGCcaccAGCGCGCUGGcggucacggccUGGCCaCGGa -3'
miRNA:   3'- -GUUGUCG----UCGCGCGGCU-----------ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 46560 0.73 0.2208
Target:  5'- gCAGCGGCaAGCGCG-UGGUGGCCcUGGc -3'
miRNA:   3'- -GUUGUCG-UCGCGCgGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 3945 0.74 0.199323
Target:  5'- -cGCAGCGGCGUGCCuucgguGUGGUCgUCGGu -3'
miRNA:   3'- guUGUCGUCGCGCGGc-----UACCGG-AGCC- -5'
18978 3' -58.7 NC_004684.1 + 4656 0.89 0.016435
Target:  5'- -uGCAGCAGCGCcUCGAUGGCCUCGGc -3'
miRNA:   3'- guUGUCGUCGCGcGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 18443 0.73 0.232261
Target:  5'- gAGCGGCAccGCGcCGCCGGUcGGCUcCGGg -3'
miRNA:   3'- gUUGUCGU--CGC-GCGGCUA-CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 20887 0.84 0.039718
Target:  5'- -cGCGGCuggcguuGCGUGCCGGUGGCUUCGGg -3'
miRNA:   3'- guUGUCGu------CGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 23052 0.74 0.199323
Target:  5'- uGGCGGCguuGGCGCGCUucUGGCCUuCGGc -3'
miRNA:   3'- gUUGUCG---UCGCGCGGcuACCGGA-GCC- -5'
18978 3' -58.7 NC_004684.1 + 27469 0.73 0.244219
Target:  5'- gAGCAcGCgcuccGGCGCGauGGUGGCCUUGGg -3'
miRNA:   3'- gUUGU-CG-----UCGCGCggCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 22713 0.72 0.276351
Target:  5'- uGGCGGCGGCcucccacaGCGCCGuaacGGCCUCa- -3'
miRNA:   3'- gUUGUCGUCG--------CGCGGCua--CCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 11903 0.81 0.062976
Target:  5'- gGACAGCGGCGCGCucgcgcccuucuccaCGGUGGCCuggUCGGc -3'
miRNA:   3'- gUUGUCGUCGCGCG---------------GCUACCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 12958 0.75 0.166107
Target:  5'- cCGGCGGCGGCcucgGCGgUGgcGGCCUCGGc -3'
miRNA:   3'- -GUUGUCGUCG----CGCgGCuaCCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.