miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 67058 0.67 0.533222
Target:  5'- -cGCAcGCuuCGCGCCGuAcccggugcgggcguUGGCCUCGGc -3'
miRNA:   3'- guUGU-CGucGCGCGGC-U--------------ACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 67042 0.66 0.598984
Target:  5'- uCGACGGCuGgggcgagauCGCGCCGGaGGCCUuCGc -3'
miRNA:   3'- -GUUGUCGuC---------GCGCGGCUaCCGGA-GCc -5'
18978 3' -58.7 NC_004684.1 + 66871 0.69 0.419373
Target:  5'- --cCAGCAcGUcaGCGCCGGUGGCgaccUUCGGc -3'
miRNA:   3'- guuGUCGU-CG--CGCGGCUACCG----GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 66865 0.68 0.484893
Target:  5'- aCAAgGGCGGCgaguaccGCGCCGA-GGUCgcCGGg -3'
miRNA:   3'- -GUUgUCGUCG-------CGCGGCUaCCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 66700 0.66 0.556993
Target:  5'- cCGGCGGCGGUcuuGCGCUGcgcGGCgaaCUCGGu -3'
miRNA:   3'- -GUUGUCGUCG---CGCGGCua-CCG---GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 66633 0.71 0.304421
Target:  5'- -uGCGGCcuuGGUG-GCCacGAUGGCCUCGGc -3'
miRNA:   3'- guUGUCG---UCGCgCGG--CUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 66309 0.67 0.536304
Target:  5'- aCGGCAGCGGCGCGUa-GUaGCgCUCGa -3'
miRNA:   3'- -GUUGUCGUCGCGCGgcUAcCG-GAGCc -5'
18978 3' -58.7 NC_004684.1 + 66009 0.69 0.401404
Target:  5'- gCAACGGCGGCcuugGCGUCGGccaggguguUGGCgUUGGu -3'
miRNA:   3'- -GUUGUCGUCG----CGCGGCU---------ACCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 65766 0.68 0.476061
Target:  5'- uGGCcGCcGCGCGCCGGUGGgCgcgcgcaCGGc -3'
miRNA:   3'- gUUGuCGuCGCGCGGCUACCgGa------GCC- -5'
18978 3' -58.7 NC_004684.1 + 65573 0.72 0.256683
Target:  5'- -cGCAGguCAGC-CGCC-AUGGCCUCGGu -3'
miRNA:   3'- guUGUC--GUCGcGCGGcUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 65453 0.69 0.410327
Target:  5'- -cGCGGCcaccGUGCGCCGGUaccaGGCC-CGGc -3'
miRNA:   3'- guUGUCGu---CGCGCGGCUA----CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 64934 0.72 0.269664
Target:  5'- uGGCGGCGGUgaGCGCCuggcgggcGGUGGCC-CGGu -3'
miRNA:   3'- gUUGUCGUCG--CGCGG--------CUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 64292 0.67 0.505798
Target:  5'- -cGCGcGCAGUGCGCCc-UGGCCgucgUGGu -3'
miRNA:   3'- guUGU-CGUCGCGCGGcuACCGGa---GCC- -5'
18978 3' -58.7 NC_004684.1 + 63776 0.67 0.536304
Target:  5'- cCGACAGCAGgGUGaa---GGCCUUGGc -3'
miRNA:   3'- -GUUGUCGUCgCGCggcuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 63642 0.69 0.401404
Target:  5'- uGAUGGCAGCG-GCCGAggaGGCCgagCGc -3'
miRNA:   3'- gUUGUCGUCGCgCGGCUa--CCGGa--GCc -5'
18978 3' -58.7 NC_004684.1 + 63583 0.73 0.244219
Target:  5'- uCGGCcugcGCGGCGCGgCGGUGguuaccGCCUCGGa -3'
miRNA:   3'- -GUUGu---CGUCGCGCgGCUAC------CGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 63579 0.66 0.588427
Target:  5'- uGGC-GCAgGCGCaGCUGGaGGCCUCGc -3'
miRNA:   3'- gUUGuCGU-CGCG-CGGCUaCCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 63511 0.66 0.556993
Target:  5'- cCAGCagGGCGGCcugGCGUCGcagcucgcgggcGUGGCgCUCGGc -3'
miRNA:   3'- -GUUG--UCGUCG---CGCGGC------------UACCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 63372 0.67 0.515888
Target:  5'- gAGCGGCcgacGCGCcaGCCGAUGGCggcguagCGGu -3'
miRNA:   3'- gUUGUCGu---CGCG--CGGCUACCGga-----GCC- -5'
18978 3' -58.7 NC_004684.1 + 63030 0.69 0.392605
Target:  5'- uCGGCGcGCGccGCGCGCUGGUcGGCUUCGu -3'
miRNA:   3'- -GUUGU-CGU--CGCGCGGCUA-CCGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.