miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 16374 0.67 0.515888
Target:  5'- aCGACAGUGaaGCGCCGcgucgGGCC-CGGc -3'
miRNA:   3'- -GUUGUCGUcgCGCGGCua---CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 16591 0.66 0.567425
Target:  5'- -cGCcGcCAGCGUcuGCUGGUGGCCUCc- -3'
miRNA:   3'- guUGuC-GUCGCG--CGGCUACCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 18355 0.66 0.609566
Target:  5'- aGGCGGCcgGGCGUGCCGuu-GCCgUCGa -3'
miRNA:   3'- gUUGUCG--UCGCGCGGCuacCGG-AGCc -5'
18978 3' -58.7 NC_004684.1 + 18443 0.73 0.232261
Target:  5'- gAGCGGCAccGCGcCGCCGGUcGGCUcCGGg -3'
miRNA:   3'- gUUGUCGU--CGC-GCGGCUA-CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 18563 0.75 0.174598
Target:  5'- gCGACGGCGGCcgaggucaagaccGCGCUGGUGGCUcUGGa -3'
miRNA:   3'- -GUUGUCGUCG-------------CGCGGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 19538 0.67 0.515888
Target:  5'- cCAGCuGCGGgUGCGCCGGgcggugccaGGUCUcCGGg -3'
miRNA:   3'- -GUUGuCGUC-GCGCGGCUa--------CCGGA-GCC- -5'
18978 3' -58.7 NC_004684.1 + 19836 0.7 0.350536
Target:  5'- uGACGGCGGCGCauGCCGGUuGCCgCGc -3'
miRNA:   3'- gUUGUCGUCGCG--CGGCUAcCGGaGCc -5'
18978 3' -58.7 NC_004684.1 + 20231 0.67 0.505798
Target:  5'- uGGguGCgccuGGCGCGCCGGUacuacuuccGGCC-CGGc -3'
miRNA:   3'- gUUguCG----UCGCGCGGCUA---------CCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 20292 0.67 0.515888
Target:  5'- aCAcCAGCgagaAGUGCGCCGAcaccaUGGCggCGGc -3'
miRNA:   3'- -GUuGUCG----UCGCGCGGCU-----ACCGgaGCC- -5'
18978 3' -58.7 NC_004684.1 + 20887 0.84 0.039718
Target:  5'- -cGCGGCuggcguuGCGUGCCGGUGGCUUCGGg -3'
miRNA:   3'- guUGUCGu------CGCGCGGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 21411 0.71 0.334629
Target:  5'- -uGCGGCGGuCGCGCCGGaccaccGCCUCGc -3'
miRNA:   3'- guUGUCGUC-GCGCGGCUac----CGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 22185 0.72 0.261168
Target:  5'- aCGGCGGCGGCGacCGCCuucggacuggcgcaGGUGGCCUCc- -3'
miRNA:   3'- -GUUGUCGUCGC--GCGG--------------CUACCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 22274 0.66 0.567425
Target:  5'- cCGAaGGCGGuCGcCGCCGccGUGGCCcugCGGu -3'
miRNA:   3'- -GUUgUCGUC-GC-GCGGC--UACCGGa--GCC- -5'
18978 3' -58.7 NC_004684.1 + 22363 0.68 0.489834
Target:  5'- gCGGCGGCGGuCGCGCUggcgguggacgugcaGgcGGCgUCGGc -3'
miRNA:   3'- -GUUGUCGUC-GCGCGG---------------CuaCCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 22381 0.66 0.577905
Target:  5'- --uCGGCAcCGcCGCCGcgcgGGCCUUGGc -3'
miRNA:   3'- guuGUCGUcGC-GCGGCua--CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 22583 0.66 0.609566
Target:  5'- -uACGGCGGUGUucgGCUucaaaGGCCUCGGu -3'
miRNA:   3'- guUGUCGUCGCG---CGGcua--CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 22713 0.72 0.276351
Target:  5'- uGGCGGCGGCcucccacaGCGCCGuaacGGCCUCa- -3'
miRNA:   3'- gUUGUCGUCG--------CGCGGCua--CCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 22998 0.66 0.609566
Target:  5'- uCAACGGCc-UGgGCCGAcUGGCCgccgUCGGc -3'
miRNA:   3'- -GUUGUCGucGCgCGGCU-ACCGG----AGCC- -5'
18978 3' -58.7 NC_004684.1 + 23052 0.74 0.199323
Target:  5'- uGGCGGCguuGGCGCGCUucUGGCCUuCGGc -3'
miRNA:   3'- gUUGUCG---UCGCGCGGcuACCGGA-GCC- -5'
18978 3' -58.7 NC_004684.1 + 23716 0.69 0.391732
Target:  5'- gGGCGGCGGCGCGCucaacauCGcUGGCggcgcacugCUCGGu -3'
miRNA:   3'- gUUGUCGUCGCGCG-------GCuACCG---------GAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.