miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 3' -63.7 NC_004684.1 + 66967 0.66 0.352896
Target:  5'- aGCCGUcGACCUCGGgGUGCcagucGCCCa-- -3'
miRNA:   3'- -UGGCA-CUGGGGCCgCAUGc----CGGGgag -5'
18979 3' -63.7 NC_004684.1 + 25006 0.66 0.352896
Target:  5'- cGCCGcccagcgcgcUGAUCgCGGCG-GCGGCCaUCUCg -3'
miRNA:   3'- -UGGC----------ACUGGgGCCGCaUGCCGG-GGAG- -5'
18979 3' -63.7 NC_004684.1 + 64525 0.66 0.360798
Target:  5'- cACCGaUGACgCCCaGCGgcucgGCGGCCUUg- -3'
miRNA:   3'- -UGGC-ACUG-GGGcCGCa----UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 54880 0.66 0.360798
Target:  5'- gUCGUGGCCCucacaacgugCGGCacgagGCGGCCCUg- -3'
miRNA:   3'- uGGCACUGGG----------GCCGca---UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 13258 0.66 0.368824
Target:  5'- gGCCGUGACCgCCaGCGcGCugguGGCCgCCg- -3'
miRNA:   3'- -UGGCACUGG-GGcCGCaUG----CCGG-GGag -5'
18979 3' -63.7 NC_004684.1 + 64038 0.66 0.37697
Target:  5'- cACCGUGGCCauGuG-GUACGGCaCCCa- -3'
miRNA:   3'- -UGGCACUGGggC-CgCAUGCCG-GGGag -5'
18979 3' -63.7 NC_004684.1 + 33461 0.66 0.37697
Target:  5'- cGCUGUGgucuGCCUCGGCG-GCGGCUgCg- -3'
miRNA:   3'- -UGGCAC----UGGGGCCGCaUGCCGGgGag -5'
18979 3' -63.7 NC_004684.1 + 34072 0.66 0.37697
Target:  5'- cACCGgcGACCCUGGCGcgGCGGgCgCg- -3'
miRNA:   3'- -UGGCa-CUGGGGCCGCa-UGCCgGgGag -5'
18979 3' -63.7 NC_004684.1 + 19443 0.66 0.384405
Target:  5'- cACCGUGcgcccauGCCCgGGCGgcgGUGGCCCg-- -3'
miRNA:   3'- -UGGCAC-------UGGGgCCGCa--UGCCGGGgag -5'
18979 3' -63.7 NC_004684.1 + 32812 0.66 0.385238
Target:  5'- cACCGUGugCagCGGCGUggAUGGUUCC-Ca -3'
miRNA:   3'- -UGGCACugGg-GCCGCA--UGCCGGGGaG- -5'
18979 3' -63.7 NC_004684.1 + 2295 0.66 0.385238
Target:  5'- gACCaUGuuguCCUCGGCGUaguggccguGCGGCaCCUCg -3'
miRNA:   3'- -UGGcACu---GGGGCCGCA---------UGCCGgGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.