miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 3' -63.7 NC_004684.1 + 22257 0.68 0.255288
Target:  5'- cGCCGUGGCCCU-GCGgu--GCUCCUCg -3'
miRNA:   3'- -UGGCACUGGGGcCGCaugcCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 64021 0.68 0.267751
Target:  5'- uGCCGcgcuUGACCUCGGUGUcgGCGGUgucggCCUCg -3'
miRNA:   3'- -UGGC----ACUGGGGCCGCA--UGCCGg----GGAG- -5'
18979 3' -63.7 NC_004684.1 + 40369 0.68 0.267751
Target:  5'- gGCCuugggGGCCUCGGCGgugGCGG-CCUUCg -3'
miRNA:   3'- -UGGca---CUGGGGCCGCa--UGCCgGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 41451 0.68 0.273518
Target:  5'- cGCCGgugucaguggggcUGACCCCGGCGgUGCuGGCCa--- -3'
miRNA:   3'- -UGGC-------------ACUGGGGCCGC-AUG-CCGGggag -5'
18979 3' -63.7 NC_004684.1 + 60060 0.68 0.274165
Target:  5'- cUCGUGGCgcgcggCCCGGCGgcccgUGCGGgCCUUCa -3'
miRNA:   3'- uGGCACUG------GGGCCGC-----AUGCCgGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 45141 0.68 0.274165
Target:  5'- cACCcaGGCCUCGGCGaagucgACGGCgUCCUCc -3'
miRNA:   3'- -UGGcaCUGGGGCCGCa-----UGCCG-GGGAG- -5'
18979 3' -63.7 NC_004684.1 + 20246 0.68 0.274165
Target:  5'- cGCCGguacuacuuccGGCCCgGcGCGUuccCGGCCCCUg -3'
miRNA:   3'- -UGGCa----------CUGGGgC-CGCAu--GCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 1223 0.68 0.278728
Target:  5'- uUCGUcGGCCUCGGCGgccuggucggucgccCGGCCCCg- -3'
miRNA:   3'- uGGCA-CUGGGGCCGCau-------------GCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 15978 0.68 0.287361
Target:  5'- gGCCGUGACaCCGGCagaggccgaaacGUcCGGCUCCg- -3'
miRNA:   3'- -UGGCACUGgGGCCG------------CAuGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 25347 0.68 0.287361
Target:  5'- cCCgGUGGCCuuGGCG-GCGGCCUg-- -3'
miRNA:   3'- uGG-CACUGGggCCGCaUGCCGGGgag -5'
18979 3' -63.7 NC_004684.1 + 66822 0.67 0.300356
Target:  5'- gACgGUGGCCUCGGCcuuguccuccucgGUgGCGGCCUCg- -3'
miRNA:   3'- -UGgCACUGGGGCCG-------------CA-UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 37579 0.67 0.308084
Target:  5'- aGCUGgagGugCCCGGCaucgguaccGUGCGGgCCCg- -3'
miRNA:   3'- -UGGCa--CugGGGCCG---------CAUGCCgGGGag -5'
18979 3' -63.7 NC_004684.1 + 3032 0.67 0.315241
Target:  5'- cGCCGaUGGCCUCGGUGcuCGGCaccggaggcaCCUCg -3'
miRNA:   3'- -UGGC-ACUGGGGCCGCauGCCGg---------GGAG- -5'
18979 3' -63.7 NC_004684.1 + 26440 0.67 0.315241
Target:  5'- cGCCgGUGG-CCCGGUGUACGGCggcacgCCUg -3'
miRNA:   3'- -UGG-CACUgGGGCCGCAUGCCGg-----GGAg -5'
18979 3' -63.7 NC_004684.1 + 1895 0.67 0.322523
Target:  5'- gGCCGaUGACaCCGGCG-ACcucGCCCUUCu -3'
miRNA:   3'- -UGGC-ACUGgGGCCGCaUGc--CGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 42221 0.67 0.322523
Target:  5'- -aCGUGGCCgCCGGUGU-CGGCaCCg- -3'
miRNA:   3'- ugGCACUGG-GGCCGCAuGCCGgGGag -5'
18979 3' -63.7 NC_004684.1 + 9879 0.67 0.329929
Target:  5'- cACCGgcgcagGGCCUCGGCGUAgaGGUCuuccacgcaggCCUCg -3'
miRNA:   3'- -UGGCa-----CUGGGGCCGCAUg-CCGG-----------GGAG- -5'
18979 3' -63.7 NC_004684.1 + 28423 0.67 0.340508
Target:  5'- uGCUGguugcgcuugGACCCCGGCGcgUacucguucaugaugcGCGGCUCCUg -3'
miRNA:   3'- -UGGCa---------CUGGGGCCGC--A---------------UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 12823 0.66 0.345116
Target:  5'- -gCGUcGACCUCGGCcugGUccACGGCCUCUg -3'
miRNA:   3'- ugGCA-CUGGGGCCG---CA--UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 65449 0.66 0.345116
Target:  5'- gACCGUcGCCCUGGUGgcccugGgGGCCgCCaUCg -3'
miRNA:   3'- -UGGCAcUGGGGCCGCa-----UgCCGG-GG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.