Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 66822 | 0.67 | 0.300356 |
Target: 5'- gACgGUGGCCUCGGCcuuguccuccucgGUgGCGGCCUCg- -3' miRNA: 3'- -UGgCACUGGGGCCG-------------CA-UGCCGGGGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 15978 | 0.68 | 0.287361 |
Target: 5'- gGCCGUGACaCCGGCagaggccgaaacGUcCGGCUCCg- -3' miRNA: 3'- -UGGCACUGgGGCCG------------CAuGCCGGGGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 25347 | 0.68 | 0.287361 |
Target: 5'- cCCgGUGGCCuuGGCG-GCGGCCUg-- -3' miRNA: 3'- uGG-CACUGGggCCGCaUGCCGGGgag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 1223 | 0.68 | 0.278728 |
Target: 5'- uUCGUcGGCCUCGGCGgccuggucggucgccCGGCCCCg- -3' miRNA: 3'- uGGCA-CUGGGGCCGCau-------------GCCGGGGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 20246 | 0.68 | 0.274165 |
Target: 5'- cGCCGguacuacuuccGGCCCgGcGCGUuccCGGCCCCUg -3' miRNA: 3'- -UGGCa----------CUGGGgC-CGCAu--GCCGGGGAg -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 60060 | 0.68 | 0.274165 |
Target: 5'- cUCGUGGCgcgcggCCCGGCGgcccgUGCGGgCCUUCa -3' miRNA: 3'- uGGCACUG------GGGCCGC-----AUGCCgGGGAG- -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 45141 | 0.68 | 0.274165 |
Target: 5'- cACCcaGGCCUCGGCGaagucgACGGCgUCCUCc -3' miRNA: 3'- -UGGcaCUGGGGCCGCa-----UGCCG-GGGAG- -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 41451 | 0.68 | 0.273518 |
Target: 5'- cGCCGgugucaguggggcUGACCCCGGCGgUGCuGGCCa--- -3' miRNA: 3'- -UGGC-------------ACUGGGGCCGC-AUG-CCGGggag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 64021 | 0.68 | 0.267751 |
Target: 5'- uGCCGcgcuUGACCUCGGUGUcgGCGGUgucggCCUCg -3' miRNA: 3'- -UGGC----ACUGGGGCCGCA--UGCCGg----GGAG- -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 40369 | 0.68 | 0.267751 |
Target: 5'- gGCCuugggGGCCUCGGCGgugGCGG-CCUUCg -3' miRNA: 3'- -UGGca---CUGGGGCCGCa--UGCCgGGGAG- -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 22257 | 0.68 | 0.255288 |
Target: 5'- cGCCGUGGCCCU-GCGgu--GCUCCUCg -3' miRNA: 3'- -UGGCACUGGGGcCGCaugcCGGGGAG- -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 28056 | 0.68 | 0.255287 |
Target: 5'- uGCCGguggucGGCCCCGGCGgugugGCcgGGCCgCCg- -3' miRNA: 3'- -UGGCa-----CUGGGGCCGCa----UG--CCGG-GGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 33197 | 0.69 | 0.24804 |
Target: 5'- cACCGUGGCCauGGCGacggacagcccgGCGGCCCa-- -3' miRNA: 3'- -UGGCACUGGggCCGCa-----------UGCCGGGgag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 45402 | 0.69 | 0.243304 |
Target: 5'- cACCG-GACCCUGGCGcaccaccuUGGCCUCg- -3' miRNA: 3'- -UGGCaCUGGGGCCGCau------GCCGGGGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 67374 | 0.69 | 0.231791 |
Target: 5'- uACCGc--CCCCGGUGUcCGGCUCCa- -3' miRNA: 3'- -UGGCacuGGGGCCGCAuGCCGGGGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 33828 | 0.7 | 0.205012 |
Target: 5'- gGCgGUGugCCCGGCGgcgGCGGCaaCg- -3' miRNA: 3'- -UGgCACugGGGCCGCa--UGCCGggGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 66645 | 0.7 | 0.199988 |
Target: 5'- gGCCacgaUGGCCUCGGCG-GCGGCCCg-- -3' miRNA: 3'- -UGGc---ACUGGGGCCGCaUGCCGGGgag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 56053 | 0.7 | 0.192173 |
Target: 5'- cGCCGaUGACCCgcuggagcgcggcguCGGCGU-CGGCCUCg- -3' miRNA: 3'- -UGGC-ACUGGG---------------GCCGCAuGCCGGGGag -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 49792 | 0.71 | 0.182782 |
Target: 5'- uGCCGgGAucagcucguaguccuCCCCGGCcaucacaUACGGUCCCUCg -3' miRNA: 3'- -UGGCaCU---------------GGGGCCGc------AUGCCGGGGAG- -5' |
|||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 41928 | 0.71 | 0.180953 |
Target: 5'- gGCCGUGACCaaGGCGgucaacgGCGGCaCCa- -3' miRNA: 3'- -UGGCACUGGggCCGCa------UGCCGgGGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home