miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 3' -63.7 NC_004684.1 + 28056 0.68 0.255287
Target:  5'- uGCCGguggucGGCCCCGGCGgugugGCcgGGCCgCCg- -3'
miRNA:   3'- -UGGCa-----CUGGGGCCGCa----UG--CCGG-GGag -5'
18979 3' -63.7 NC_004684.1 + 28423 0.67 0.340508
Target:  5'- uGCUGguugcgcuugGACCCCGGCGcgUacucguucaugaugcGCGGCUCCUg -3'
miRNA:   3'- -UGGCa---------CUGGGGCCGC--A---------------UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 32812 0.66 0.385238
Target:  5'- cACCGUGugCagCGGCGUggAUGGUUCC-Ca -3'
miRNA:   3'- -UGGCACugGg-GCCGCA--UGCCGGGGaG- -5'
18979 3' -63.7 NC_004684.1 + 33197 0.69 0.24804
Target:  5'- cACCGUGGCCauGGCGacggacagcccgGCGGCCCa-- -3'
miRNA:   3'- -UGGCACUGGggCCGCa-----------UGCCGGGgag -5'
18979 3' -63.7 NC_004684.1 + 33461 0.66 0.37697
Target:  5'- cGCUGUGgucuGCCUCGGCG-GCGGCUgCg- -3'
miRNA:   3'- -UGGCAC----UGGGGCCGCaUGCCGGgGag -5'
18979 3' -63.7 NC_004684.1 + 33828 0.7 0.205012
Target:  5'- gGCgGUGugCCCGGCGgcgGCGGCaaCg- -3'
miRNA:   3'- -UGgCACugGGGCCGCa--UGCCGggGag -5'
18979 3' -63.7 NC_004684.1 + 34072 0.66 0.37697
Target:  5'- cACCGgcGACCCUGGCGcgGCGGgCgCg- -3'
miRNA:   3'- -UGGCa-CUGGGGCCGCa-UGCCgGgGag -5'
18979 3' -63.7 NC_004684.1 + 37579 0.67 0.308084
Target:  5'- aGCUGgagGugCCCGGCaucgguaccGUGCGGgCCCg- -3'
miRNA:   3'- -UGGCa--CugGGGCCG---------CAUGCCgGGGag -5'
18979 3' -63.7 NC_004684.1 + 39436 0.86 0.01292
Target:  5'- gACCGUGGCCCCaggccgaGGCGUGCGGCUaCCUCg -3'
miRNA:   3'- -UGGCACUGGGG-------CCGCAUGCCGG-GGAG- -5'
18979 3' -63.7 NC_004684.1 + 40369 0.68 0.267751
Target:  5'- gGCCuugggGGCCUCGGCGgugGCGG-CCUUCg -3'
miRNA:   3'- -UGGca---CUGGGGCCGCa--UGCCgGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 41451 0.68 0.273518
Target:  5'- cGCCGgugucaguggggcUGACCCCGGCGgUGCuGGCCa--- -3'
miRNA:   3'- -UGGC-------------ACUGGGGCCGC-AUG-CCGGggag -5'
18979 3' -63.7 NC_004684.1 + 41928 0.71 0.180953
Target:  5'- gGCCGUGACCaaGGCGgucaacgGCGGCaCCa- -3'
miRNA:   3'- -UGGCACUGGggCCGCa------UGCCGgGGag -5'
18979 3' -63.7 NC_004684.1 + 42221 0.67 0.322523
Target:  5'- -aCGUGGCCgCCGGUGU-CGGCaCCg- -3'
miRNA:   3'- ugGCACUGG-GGCCGCAuGCCGgGGag -5'
18979 3' -63.7 NC_004684.1 + 45141 0.68 0.274165
Target:  5'- cACCcaGGCCUCGGCGaagucgACGGCgUCCUCc -3'
miRNA:   3'- -UGGcaCUGGGGCCGCa-----UGCCG-GGGAG- -5'
18979 3' -63.7 NC_004684.1 + 45402 0.69 0.243304
Target:  5'- cACCG-GACCCUGGCGcaccaccuUGGCCUCg- -3'
miRNA:   3'- -UGGCaCUGGGGCCGCau------GCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 47128 0.72 0.147651
Target:  5'- -gCGUGcGCCUCGGUGgcguagGCGGCCCCg- -3'
miRNA:   3'- ugGCAC-UGGGGCCGCa-----UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 49792 0.71 0.182782
Target:  5'- uGCCGgGAucagcucguaguccuCCCCGGCcaucacaUACGGUCCCUCg -3'
miRNA:   3'- -UGGCaCU---------------GGGGCCGc------AUGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 54880 0.66 0.360798
Target:  5'- gUCGUGGCCCucacaacgugCGGCacgagGCGGCCCUg- -3'
miRNA:   3'- uGGCACUGGG----------GCCGca---UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 56053 0.7 0.192173
Target:  5'- cGCCGaUGACCCgcuggagcgcggcguCGGCGU-CGGCCUCg- -3'
miRNA:   3'- -UGGC-ACUGGG---------------GCCGCAuGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 60060 0.68 0.274165
Target:  5'- cUCGUGGCgcgcggCCCGGCGgcccgUGCGGgCCUUCa -3'
miRNA:   3'- uGGCACUG------GGGCCGC-----AUGCCgGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.