miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 3' -63.7 NC_004684.1 + 1223 0.68 0.278728
Target:  5'- uUCGUcGGCCUCGGCGgccuggucggucgccCGGCCCCg- -3'
miRNA:   3'- uGGCA-CUGGGGCCGCau-------------GCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 1895 0.67 0.322523
Target:  5'- gGCCGaUGACaCCGGCG-ACcucGCCCUUCu -3'
miRNA:   3'- -UGGC-ACUGgGGCCGCaUGc--CGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 2295 0.66 0.385238
Target:  5'- gACCaUGuuguCCUCGGCGUaguggccguGCGGCaCCUCg -3'
miRNA:   3'- -UGGcACu---GGGGCCGCA---------UGCCGgGGAG- -5'
18979 3' -63.7 NC_004684.1 + 3032 0.67 0.315241
Target:  5'- cGCCGaUGGCCUCGGUGcuCGGCaccggaggcaCCUCg -3'
miRNA:   3'- -UGGC-ACUGGGGCCGCauGCCGg---------GGAG- -5'
18979 3' -63.7 NC_004684.1 + 3125 0.8 0.037885
Target:  5'- cCCG-GGCCUCGuuGUGCGGCCCCUCg -3'
miRNA:   3'- uGGCaCUGGGGCcgCAUGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 3225 1.07 0.000313
Target:  5'- cACCGUGACCCCGGCGUACGGCCCCUCc -3'
miRNA:   3'- -UGGCACUGGGGCCGCAUGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 9213 0.78 0.055434
Target:  5'- gACCaUGGCCUCGGCGgugAUGGCCCCa- -3'
miRNA:   3'- -UGGcACUGGGGCCGCa--UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 9466 0.72 0.147651
Target:  5'- uACCGgcgucGuCCUCGGUGUcCGGCUCCUCg -3'
miRNA:   3'- -UGGCa----CuGGGGCCGCAuGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 9879 0.67 0.329929
Target:  5'- cACCGgcgcagGGCCUCGGCGUAgaGGUCuuccacgcaggCCUCg -3'
miRNA:   3'- -UGGCa-----CUGGGGCCGCAUg-CCGG-----------GGAG- -5'
18979 3' -63.7 NC_004684.1 + 12823 0.66 0.345116
Target:  5'- -gCGUcGACCUCGGCcugGUccACGGCCUCUg -3'
miRNA:   3'- ugGCA-CUGGGGCCG---CA--UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 12959 0.72 0.133179
Target:  5'- cCCGgcggcGGCCUCGGCGgugGCGGCCUCg- -3'
miRNA:   3'- uGGCa----CUGGGGCCGCa--UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 13258 0.66 0.368824
Target:  5'- gGCCGUGACCgCCaGCGcGCugguGGCCgCCg- -3'
miRNA:   3'- -UGGCACUGG-GGcCGCaUG----CCGG-GGag -5'
18979 3' -63.7 NC_004684.1 + 15978 0.68 0.287361
Target:  5'- gGCCGUGACaCCGGCagaggccgaaacGUcCGGCUCCg- -3'
miRNA:   3'- -UGGCACUGgGGCCG------------CAuGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 19443 0.66 0.384405
Target:  5'- cACCGUGcgcccauGCCCgGGCGgcgGUGGCCCg-- -3'
miRNA:   3'- -UGGCAC-------UGGGgCCGCa--UGCCGGGgag -5'
18979 3' -63.7 NC_004684.1 + 20246 0.68 0.274165
Target:  5'- cGCCGguacuacuuccGGCCCgGcGCGUuccCGGCCCCUg -3'
miRNA:   3'- -UGGCa----------CUGGGgC-CGCAu--GCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 22257 0.68 0.255288
Target:  5'- cGCCGUGGCCCU-GCGgu--GCUCCUCg -3'
miRNA:   3'- -UGGCACUGGGGcCGCaugcCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 25006 0.66 0.352896
Target:  5'- cGCCGcccagcgcgcUGAUCgCGGCG-GCGGCCaUCUCg -3'
miRNA:   3'- -UGGC----------ACUGGgGCCGCaUGCCGG-GGAG- -5'
18979 3' -63.7 NC_004684.1 + 25316 0.71 0.180953
Target:  5'- uUCGUcGGCCCUGGCGgcguaugGCGGCCUCc- -3'
miRNA:   3'- uGGCA-CUGGGGCCGCa------UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 25347 0.68 0.287361
Target:  5'- cCCgGUGGCCuuGGCG-GCGGCCUg-- -3'
miRNA:   3'- uGG-CACUGGggCCGCaUGCCGGGgag -5'
18979 3' -63.7 NC_004684.1 + 26440 0.67 0.315241
Target:  5'- cGCCgGUGG-CCCGGUGUACGGCggcacgCCUg -3'
miRNA:   3'- -UGG-CACUgGGGCCGCAUGCCGg-----GGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.