miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18979 3' -63.7 NC_004684.1 + 67374 0.69 0.231791
Target:  5'- uACCGc--CCCCGGUGUcCGGCUCCa- -3'
miRNA:   3'- -UGGCacuGGGGCCGCAuGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 66967 0.66 0.352896
Target:  5'- aGCCGUcGACCUCGGgGUGCcagucGCCCa-- -3'
miRNA:   3'- -UGGCA-CUGGGGCCgCAUGc----CGGGgag -5'
18979 3' -63.7 NC_004684.1 + 66822 0.67 0.300356
Target:  5'- gACgGUGGCCUCGGCcuuguccuccucgGUgGCGGCCUCg- -3'
miRNA:   3'- -UGgCACUGGGGCCG-------------CA-UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 66645 0.7 0.199988
Target:  5'- gGCCacgaUGGCCUCGGCG-GCGGCCCg-- -3'
miRNA:   3'- -UGGc---ACUGGGGCCGCaUGCCGGGgag -5'
18979 3' -63.7 NC_004684.1 + 66007 0.75 0.092253
Target:  5'- gGCCGgacGugCCCGGUGcgGCGGCCCUg- -3'
miRNA:   3'- -UGGCa--CugGGGCCGCa-UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 65449 0.66 0.345116
Target:  5'- gACCGUcGCCCUGGUGgcccugGgGGCCgCCaUCg -3'
miRNA:   3'- -UGGCAcUGGGGCCGCa-----UgCCGG-GG-AG- -5'
18979 3' -63.7 NC_004684.1 + 64525 0.66 0.360798
Target:  5'- cACCGaUGACgCCCaGCGgcucgGCGGCCUUg- -3'
miRNA:   3'- -UGGC-ACUG-GGGcCGCa----UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 64038 0.66 0.37697
Target:  5'- cACCGUGGCCauGuG-GUACGGCaCCCa- -3'
miRNA:   3'- -UGGCACUGGggC-CgCAUGCCG-GGGag -5'
18979 3' -63.7 NC_004684.1 + 64021 0.68 0.267751
Target:  5'- uGCCGcgcuUGACCUCGGUGUcgGCGGUgucggCCUCg -3'
miRNA:   3'- -UGGC----ACUGGGGCCGCA--UGCCGg----GGAG- -5'
18979 3' -63.7 NC_004684.1 + 63225 0.74 0.09727
Target:  5'- aGCCG-GugCCCGGCGgaAUGGCCUCUa -3'
miRNA:   3'- -UGGCaCugGGGCCGCa-UGCCGGGGAg -5'
18979 3' -63.7 NC_004684.1 + 61192 0.72 0.140244
Target:  5'- uUgGUGGCCUCGGCGUACaccuGGCCgUUCg -3'
miRNA:   3'- uGgCACUGGGGCCGCAUG----CCGGgGAG- -5'
18979 3' -63.7 NC_004684.1 + 60060 0.68 0.274165
Target:  5'- cUCGUGGCgcgcggCCCGGCGgcccgUGCGGgCCUUCa -3'
miRNA:   3'- uGGCACUG------GGGCCGC-----AUGCCgGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 56053 0.7 0.192173
Target:  5'- cGCCGaUGACCCgcuggagcgcggcguCGGCGU-CGGCCUCg- -3'
miRNA:   3'- -UGGC-ACUGGG---------------GCCGCAuGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 54880 0.66 0.360798
Target:  5'- gUCGUGGCCCucacaacgugCGGCacgagGCGGCCCUg- -3'
miRNA:   3'- uGGCACUGGG----------GCCGca---UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 49792 0.71 0.182782
Target:  5'- uGCCGgGAucagcucguaguccuCCCCGGCcaucacaUACGGUCCCUCg -3'
miRNA:   3'- -UGGCaCU---------------GGGGCCGc------AUGCCGGGGAG- -5'
18979 3' -63.7 NC_004684.1 + 47128 0.72 0.147651
Target:  5'- -gCGUGcGCCUCGGUGgcguagGCGGCCCCg- -3'
miRNA:   3'- ugGCAC-UGGGGCCGCa-----UGCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 45402 0.69 0.243304
Target:  5'- cACCG-GACCCUGGCGcaccaccuUGGCCUCg- -3'
miRNA:   3'- -UGGCaCUGGGGCCGCau------GCCGGGGag -5'
18979 3' -63.7 NC_004684.1 + 45141 0.68 0.274165
Target:  5'- cACCcaGGCCUCGGCGaagucgACGGCgUCCUCc -3'
miRNA:   3'- -UGGcaCUGGGGCCGCa-----UGCCG-GGGAG- -5'
18979 3' -63.7 NC_004684.1 + 42221 0.67 0.322523
Target:  5'- -aCGUGGCCgCCGGUGU-CGGCaCCg- -3'
miRNA:   3'- ugGCACUGG-GGCCGCAuGCCGgGGag -5'
18979 3' -63.7 NC_004684.1 + 41928 0.71 0.180953
Target:  5'- gGCCGUGACCaaGGCGgucaacgGCGGCaCCa- -3'
miRNA:   3'- -UGGCACUGGggCCGCa------UGCCGgGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.