Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18979 | 3' | -63.7 | NC_004684.1 | + | 3225 | 1.07 | 0.000313 |
Target: 5'- cACCGUGACCCCGGCGUACGGCCCCUCc -3' miRNA: 3'- -UGGCACUGGGGCCGCAUGCCGGGGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 39436 | 0.86 | 0.01292 |
Target: 5'- gACCGUGGCCCCaggccgaGGCGUGCGGCUaCCUCg -3' miRNA: 3'- -UGGCACUGGGG-------CCGCAUGCCGG-GGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 3125 | 0.8 | 0.037885 |
Target: 5'- cCCG-GGCCUCGuuGUGCGGCCCCUCg -3' miRNA: 3'- uGGCaCUGGGGCcgCAUGCCGGGGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 9213 | 0.78 | 0.055434 |
Target: 5'- gACCaUGGCCUCGGCGgugAUGGCCCCa- -3' miRNA: 3'- -UGGcACUGGGGCCGCa--UGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 66007 | 0.75 | 0.092253 |
Target: 5'- gGCCGgacGugCCCGGUGcgGCGGCCCUg- -3' miRNA: 3'- -UGGCa--CugGGGCCGCa-UGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 63225 | 0.74 | 0.09727 |
Target: 5'- aGCCG-GugCCCGGCGgaAUGGCCUCUa -3' miRNA: 3'- -UGGCaCugGGGCCGCa-UGCCGGGGAg -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 12959 | 0.72 | 0.133179 |
Target: 5'- cCCGgcggcGGCCUCGGCGgugGCGGCCUCg- -3' miRNA: 3'- uGGCa----CUGGGGCCGCa--UGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 61192 | 0.72 | 0.140244 |
Target: 5'- uUgGUGGCCUCGGCGUACaccuGGCCgUUCg -3' miRNA: 3'- uGgCACUGGGGCCGCAUG----CCGGgGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 47128 | 0.72 | 0.147651 |
Target: 5'- -gCGUGcGCCUCGGUGgcguagGCGGCCCCg- -3' miRNA: 3'- ugGCAC-UGGGGCCGCa-----UGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 9466 | 0.72 | 0.147651 |
Target: 5'- uACCGgcgucGuCCUCGGUGUcCGGCUCCUCg -3' miRNA: 3'- -UGGCa----CuGGGGCCGCAuGCCGGGGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 41928 | 0.71 | 0.180953 |
Target: 5'- gGCCGUGACCaaGGCGgucaacgGCGGCaCCa- -3' miRNA: 3'- -UGGCACUGGggCCGCa------UGCCGgGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 25316 | 0.71 | 0.180953 |
Target: 5'- uUCGUcGGCCCUGGCGgcguaugGCGGCCUCc- -3' miRNA: 3'- uGGCA-CUGGGGCCGCa------UGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 49792 | 0.71 | 0.182782 |
Target: 5'- uGCCGgGAucagcucguaguccuCCCCGGCcaucacaUACGGUCCCUCg -3' miRNA: 3'- -UGGCaCU---------------GGGGCCGc------AUGCCGGGGAG- -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 56053 | 0.7 | 0.192173 |
Target: 5'- cGCCGaUGACCCgcuggagcgcggcguCGGCGU-CGGCCUCg- -3' miRNA: 3'- -UGGC-ACUGGG---------------GCCGCAuGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 66645 | 0.7 | 0.199988 |
Target: 5'- gGCCacgaUGGCCUCGGCG-GCGGCCCg-- -3' miRNA: 3'- -UGGc---ACUGGGGCCGCaUGCCGGGgag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 33828 | 0.7 | 0.205012 |
Target: 5'- gGCgGUGugCCCGGCGgcgGCGGCaaCg- -3' miRNA: 3'- -UGgCACugGGGCCGCa--UGCCGggGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 67374 | 0.69 | 0.231791 |
Target: 5'- uACCGc--CCCCGGUGUcCGGCUCCa- -3' miRNA: 3'- -UGGCacuGGGGCCGCAuGCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 45402 | 0.69 | 0.243304 |
Target: 5'- cACCG-GACCCUGGCGcaccaccuUGGCCUCg- -3' miRNA: 3'- -UGGCaCUGGGGCCGCau------GCCGGGGag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 33197 | 0.69 | 0.24804 |
Target: 5'- cACCGUGGCCauGGCGacggacagcccgGCGGCCCa-- -3' miRNA: 3'- -UGGCACUGGggCCGCa-----------UGCCGGGgag -5' |
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18979 | 3' | -63.7 | NC_004684.1 | + | 28056 | 0.68 | 0.255287 |
Target: 5'- uGCCGguggucGGCCCCGGCGgugugGCcgGGCCgCCg- -3' miRNA: 3'- -UGGCa-----CUGGGGCCGCa----UG--CCGG-GGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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