Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 3632 | 0.97 | 0.006975 |
Target: 5'- cAGGAAUGCCUUGCCUUGCACCG-CAGg -3' miRNA: 3'- -UCCUUACGGAACGGAACGUGGCgGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 37116 | 0.76 | 0.195599 |
Target: 5'- gAGGAggGCUggcgUGCCgccagcgcacUGCGCCGCCAGu -3' miRNA: 3'- -UCCUuaCGGa---ACGGa---------ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 9579 | 0.72 | 0.343008 |
Target: 5'- cGGGAGUGaCCggguacggcUGCgCUUGC-CCGCCAGc -3' miRNA: 3'- -UCCUUAC-GGa--------ACG-GAACGuGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22923 | 0.72 | 0.351328 |
Target: 5'- uGGccaGCCcgGCC-UGCACCGCCGGg -3' miRNA: 3'- uCCuuaCGGaaCGGaACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 10007 | 0.71 | 0.377138 |
Target: 5'- cGGAAcUGCCggaccUGCCgcGCGCCGaCCGGg -3' miRNA: 3'- uCCUU-ACGGa----ACGGaaCGUGGC-GGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 61924 | 0.7 | 0.432445 |
Target: 5'- cGGggUGCgg-GCCacgGCAcCCGCCGGg -3' miRNA: 3'- uCCuuACGgaaCGGaa-CGU-GGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22387 | 0.7 | 0.442115 |
Target: 5'- cGGggUucggcaccgccGCCgcgcggGCCUUGgcCGCCGCCAGg -3' miRNA: 3'- uCCuuA-----------CGGaa----CGGAAC--GUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 30817 | 0.7 | 0.451906 |
Target: 5'- cGGAcgGCgaUGCgaUGC-CCGCCAGc -3' miRNA: 3'- uCCUuaCGgaACGgaACGuGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40048 | 0.7 | 0.471836 |
Target: 5'- aGGGGAUGgCgcuCCggGCACCGCCAu -3' miRNA: 3'- -UCCUUACgGaacGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40162 | 0.7 | 0.475875 |
Target: 5'- cAGGAcgGCCUUGCUggcggcgaagcucaUGCGCUGCUc- -3' miRNA: 3'- -UCCUuaCGGAACGGa-------------ACGUGGCGGuc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 19773 | 0.69 | 0.481966 |
Target: 5'- cGGccagGCCUUGCCgccGCGCCGgUAGa -3' miRNA: 3'- uCCuua-CGGAACGGaa-CGUGGCgGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22813 | 0.69 | 0.502534 |
Target: 5'- cGGucgcgcGUGCCagccacgGCCUuggccacguccUGCGCCGCCGGg -3' miRNA: 3'- uCCu-----UACGGaa-----CGGA-----------ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 38920 | 0.69 | 0.512961 |
Target: 5'- cAGGGccaCCagGCCgucggGCACCGCCAGg -3' miRNA: 3'- -UCCUuacGGaaCGGaa---CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 8722 | 0.69 | 0.530886 |
Target: 5'- cGGGggUGCCgaggaucggcggUGCCggUGCACCgggcuuguucgagGCCAc -3' miRNA: 3'- -UCCuuACGGa-----------ACGGa-ACGUGG-------------CGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 12891 | 0.69 | 0.534073 |
Target: 5'- gGGGAGccUGCgCUcgccgccagcggUGCCggUGCGCCGUCGGc -3' miRNA: 3'- -UCCUU--ACG-GA------------ACGGa-ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 66979 | 0.69 | 0.534073 |
Target: 5'- cGGggUGCCagucGCCcagcUUGC-CCGCCAc -3' miRNA: 3'- uCCuuACGGaa--CGG----AACGuGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 3975 | 0.69 | 0.534073 |
Target: 5'- gAGaGGAUGUCUgaccagGCCUUgGCACUGCgCAGc -3' miRNA: 3'- -UC-CUUACGGAa-----CGGAA-CGUGGCG-GUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 20547 | 0.68 | 0.554408 |
Target: 5'- uGGGggUGCgcagcauCUUcGCCgccgUGCACagCGCCAGg -3' miRNA: 3'- -UCCuuACG-------GAA-CGGa---ACGUG--GCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 32780 | 0.68 | 0.566286 |
Target: 5'- cGGAGacguugcgguUGCCgagGCCguagccaUGcCGCCGCCAGg -3' miRNA: 3'- uCCUU----------ACGGaa-CGGa------AC-GUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 870 | 0.68 | 0.566286 |
Target: 5'- gAGGGccaucauucacgGUGCCUcggcggUGUCcaggaGCGCCGCCAGg -3' miRNA: 3'- -UCCU------------UACGGA------ACGGaa---CGUGGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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