miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 3' -55.9 NC_004684.1 + 870 0.68 0.566286
Target:  5'- gAGGGccaucauucacgGUGCCUcggcggUGUCcaggaGCGCCGCCAGg -3'
miRNA:   3'- -UCCU------------UACGGA------ACGGaa---CGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 2771 0.67 0.636314
Target:  5'- cGGGGAUGCggUGCCcggcgcugaaauggUGCuugACCGUCAGg -3'
miRNA:   3'- -UCCUUACGgaACGGa-------------ACG---UGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 2806 0.66 0.686682
Target:  5'- cGGuguggcGCaCUUGCCcccgGCACCGgCCAGg -3'
miRNA:   3'- uCCuua---CG-GAACGGaa--CGUGGC-GGUC- -5'
18980 3' -55.9 NC_004684.1 + 2918 0.66 0.719001
Target:  5'- uGGAaguauuucgagGUGCCUccggUGCCgaGCACCgagGCCAu -3'
miRNA:   3'- uCCU-----------UACGGA----ACGGaaCGUGG---CGGUc -5'
18980 3' -55.9 NC_004684.1 + 3632 0.97 0.006975
Target:  5'- cAGGAAUGCCUUGCCUUGCACCG-CAGg -3'
miRNA:   3'- -UCCUUACGGAACGGAACGUGGCgGUC- -5'
18980 3' -55.9 NC_004684.1 + 3975 0.69 0.534073
Target:  5'- gAGaGGAUGUCUgaccagGCCUUgGCACUGCgCAGc -3'
miRNA:   3'- -UC-CUUACGGAa-----CGGAA-CGUGGCG-GUC- -5'
18980 3' -55.9 NC_004684.1 + 8019 0.67 0.620923
Target:  5'- cGGAagGCCUUGCCUggguucucCACCgGCUGGc -3'
miRNA:   3'- uCCUuaCGGAACGGAac------GUGG-CGGUC- -5'
18980 3' -55.9 NC_004684.1 + 8722 0.69 0.530886
Target:  5'- cGGGggUGCCgaggaucggcggUGCCggUGCACCgggcuuguucgagGCCAc -3'
miRNA:   3'- -UCCuuACGGa-----------ACGGa-ACGUGG-------------CGGUc -5'
18980 3' -55.9 NC_004684.1 + 9579 0.72 0.343008
Target:  5'- cGGGAGUGaCCggguacggcUGCgCUUGC-CCGCCAGc -3'
miRNA:   3'- -UCCUUAC-GGa--------ACG-GAACGuGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 10007 0.71 0.377138
Target:  5'- cGGAAcUGCCggaccUGCCgcGCGCCGaCCGGg -3'
miRNA:   3'- uCCUU-ACGGa----ACGGaaCGUGGC-GGUC- -5'
18980 3' -55.9 NC_004684.1 + 12077 0.67 0.649502
Target:  5'- cGGGGucAUGCCgucggUGCCgccggucgcggugUGCGCCgcagguGCCAGg -3'
miRNA:   3'- -UCCU--UACGGa----ACGGa------------ACGUGG------CGGUC- -5'
18980 3' -55.9 NC_004684.1 + 12856 0.67 0.64291
Target:  5'- cGGAG-GCCgagGCCgc-CACCGCCGa -3'
miRNA:   3'- uCCUUaCGGaa-CGGaacGUGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 12891 0.69 0.534073
Target:  5'- gGGGAGccUGCgCUcgccgccagcggUGCCggUGCGCCGUCGGc -3'
miRNA:   3'- -UCCUU--ACG-GA------------ACGGa-ACGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 13241 0.67 0.620923
Target:  5'- gGGGAGUuCCgugGCCagGCcgugACCGCCAGc -3'
miRNA:   3'- -UCCUUAcGGaa-CGGaaCG----UGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 13662 0.66 0.719001
Target:  5'- uGGaGAAUGCCc-GCCUcgacGCaguagccgaugGCCGCCAGg -3'
miRNA:   3'- -UC-CUUACGGaaCGGAa---CG-----------UGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 15878 0.66 0.719001
Target:  5'- uGGuGUGCacgUUGCCggUGuCGCCGCCGc -3'
miRNA:   3'- uCCuUACGg--AACGGa-AC-GUGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 18140 0.66 0.686682
Target:  5'- cGGGcAGUcGuCCUcGCCUU-CGCCGCCGGu -3'
miRNA:   3'- -UCC-UUA-C-GGAaCGGAAcGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 18463 0.66 0.719001
Target:  5'- uGGAAcuUGCCggugaUGUCgagcggcaccGCGCCGCCGGu -3'
miRNA:   3'- uCCUU--ACGGa----ACGGaa--------CGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 18522 0.67 0.598975
Target:  5'- cGGGA-GCCacgucgGCCgccggUGCGcCCGCCGGg -3'
miRNA:   3'- uCCUUaCGGaa----CGGa----ACGU-GGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 18611 0.68 0.577139
Target:  5'- --cGGUGaCCUUGCCgUUG-ACCGCCAGc -3'
miRNA:   3'- uccUUAC-GGAACGG-AACgUGGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.