Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 67018 | 0.67 | 0.631916 |
Target: 5'- cGGAG-GCCUUcGCCgagGUugugGCCGCCAa -3' miRNA: 3'- uCCUUaCGGAA-CGGaa-CG----UGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 66979 | 0.69 | 0.534073 |
Target: 5'- cGGggUGCCagucGCCcagcUUGC-CCGCCAc -3' miRNA: 3'- uCCuuACGGaa--CGG----AACGuGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 61924 | 0.7 | 0.432445 |
Target: 5'- cGGggUGCgg-GCCacgGCAcCCGCCGGg -3' miRNA: 3'- uCCuuACGgaaCGGaa-CGU-GGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 59515 | 0.67 | 0.620923 |
Target: 5'- cGGGcgcGUCguagGCCUgcgcacagguccUGCACCGCCAGc -3' miRNA: 3'- -UCCuuaCGGaa--CGGA------------ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 59437 | 0.66 | 0.686682 |
Target: 5'- -uGGcgGCCUUGCCcaccggugUGCGCCgGUCGGc -3' miRNA: 3'- ucCUuaCGGAACGGa-------ACGUGG-CGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 58935 | 0.67 | 0.598975 |
Target: 5'- cGGGGAcaacaGCCagGCCUUGCGCCggGCCc- -3' miRNA: 3'- -UCCUUa----CGGaaCGGAACGUGG--CGGuc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 58162 | 0.66 | 0.719001 |
Target: 5'- cGGGGA-GCCggUGCgacUGUGCCGCCAc -3' miRNA: 3'- -UCCUUaCGGa-ACGga-ACGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 55891 | 0.66 | 0.708299 |
Target: 5'- uGGAccUGCCcgaugGCCUguUACCGCCGGa -3' miRNA: 3'- uCCUu-ACGGaa---CGGAacGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 55760 | 0.66 | 0.719001 |
Target: 5'- uAGGuccaGCa--GCUggUGCGCCGCCAGg -3' miRNA: 3'- -UCCuua-CGgaaCGGa-ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 45074 | 0.66 | 0.719001 |
Target: 5'- -----cGCUcgGCUucuggUUGCGCCGCCAGg -3' miRNA: 3'- uccuuaCGGaaCGG-----AACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40405 | 0.67 | 0.609939 |
Target: 5'- gAGGucGUGCC-UGCCggGCGCuaCGCCAu -3' miRNA: 3'- -UCCu-UACGGaACGGaaCGUG--GCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40226 | 0.66 | 0.697522 |
Target: 5'- cAGGAucGCCgagGUCggUGCcgagGCCGCCAGc -3' miRNA: 3'- -UCCUuaCGGaa-CGGa-ACG----UGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40162 | 0.7 | 0.475875 |
Target: 5'- cAGGAcgGCCUUGCUggcggcgaagcucaUGCGCUGCUc- -3' miRNA: 3'- -UCCUuaCGGAACGGa-------------ACGUGGCGGuc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40118 | 0.67 | 0.598975 |
Target: 5'- gGGGAucgGCCcgGUC-UGCGCCGCUAa -3' miRNA: 3'- -UCCUua-CGGaaCGGaACGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40048 | 0.7 | 0.471836 |
Target: 5'- aGGGGAUGgCgcuCCggGCACCGCCAu -3' miRNA: 3'- -UCCUUACgGaacGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 38920 | 0.69 | 0.512961 |
Target: 5'- cAGGGccaCCagGCCgucggGCACCGCCAGg -3' miRNA: 3'- -UCCUuacGGaaCGGaa---CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 38558 | 0.66 | 0.664857 |
Target: 5'- cGGugccUGCCUUGUCggcgugaucGCGCCGUCGGc -3' miRNA: 3'- uCCuu--ACGGAACGGaa-------CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 37116 | 0.76 | 0.195599 |
Target: 5'- gAGGAggGCUggcgUGCCgccagcgcacUGCGCCGCCAGu -3' miRNA: 3'- -UCCUuaCGGa---ACGGa---------ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 33931 | 0.67 | 0.64291 |
Target: 5'- uGGuugGCCccgUUGCCgc-CGCCGCCGGg -3' miRNA: 3'- uCCuuaCGG---AACGGaacGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 32780 | 0.68 | 0.566286 |
Target: 5'- cGGAGacguugcgguUGCCgagGCCguagccaUGcCGCCGCCAGg -3' miRNA: 3'- uCCUU----------ACGGaa-CGGa------AC-GUGGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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