Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 19773 | 0.69 | 0.481966 |
Target: 5'- cGGccagGCCUUGCCgccGCGCCGgUAGa -3' miRNA: 3'- uCCuua-CGGAACGGaa-CGUGGCgGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 20547 | 0.68 | 0.554408 |
Target: 5'- uGGGggUGCgcagcauCUUcGCCgccgUGCACagCGCCAGg -3' miRNA: 3'- -UCCuuACG-------GAA-CGGa---ACGUG--GCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 21074 | 0.67 | 0.631916 |
Target: 5'- cAGGAucggGCCga-CC-UGCGCCGCCGc -3' miRNA: 3'- -UCCUua--CGGaacGGaACGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22387 | 0.7 | 0.442115 |
Target: 5'- cGGggUucggcaccgccGCCgcgcggGCCUUGgcCGCCGCCAGg -3' miRNA: 3'- uCCuuA-----------CGGaa----CGGAAC--GUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22482 | 0.68 | 0.588039 |
Target: 5'- uAGGAAUccGCCgacgccGCCUgcacgucCACCGCCAGc -3' miRNA: 3'- -UCCUUA--CGGaa----CGGAac-----GUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22813 | 0.69 | 0.502534 |
Target: 5'- cGGucgcgcGUGCCagccacgGCCUuggccacguccUGCGCCGCCGGg -3' miRNA: 3'- uCCu-----UACGGaa-----CGGA-----------ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 22923 | 0.72 | 0.351328 |
Target: 5'- uGGccaGCCcgGCC-UGCACCGCCGGg -3' miRNA: 3'- uCCuuaCGGaaCGGaACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 25417 | 0.67 | 0.620923 |
Target: 5'- cGGGGAgGCC--GCCauaCGCCGCCAGg -3' miRNA: 3'- -UCCUUaCGGaaCGGaacGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 25422 | 0.67 | 0.630817 |
Target: 5'- uGGggUGCCUccgaccuUGCCgcugGC-CUGUCGGa -3' miRNA: 3'- uCCuuACGGA-------ACGGaa--CGuGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 25753 | 0.67 | 0.64291 |
Target: 5'- uAGGucgcGCCcUGCCcgGUACCGCCGc -3' miRNA: 3'- -UCCuua-CGGaACGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 26075 | 0.66 | 0.67579 |
Target: 5'- cAGGAGcGCCagcgggUUGCCUUcgcGCACCagcuugGCCAGc -3' miRNA: 3'- -UCCUUaCGG------AACGGAA---CGUGG------CGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 30817 | 0.7 | 0.451906 |
Target: 5'- cGGAcgGCgaUGCgaUGC-CCGCCAGc -3' miRNA: 3'- uCCUuaCGgaACGgaACGuGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 31266 | 0.66 | 0.686682 |
Target: 5'- gAGGccuUGCCcgaucugGCCcaGCACCGCCGc -3' miRNA: 3'- -UCCuu-ACGGaa-----CGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 32780 | 0.68 | 0.566286 |
Target: 5'- cGGAGacguugcgguUGCCgagGCCguagccaUGcCGCCGCCAGg -3' miRNA: 3'- uCCUU----------ACGGaa-CGGa------AC-GUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 33931 | 0.67 | 0.64291 |
Target: 5'- uGGuugGCCccgUUGCCgc-CGCCGCCGGg -3' miRNA: 3'- uCCuuaCGG---AACGGaacGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 37116 | 0.76 | 0.195599 |
Target: 5'- gAGGAggGCUggcgUGCCgccagcgcacUGCGCCGCCAGu -3' miRNA: 3'- -UCCUuaCGGa---ACGGa---------ACGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 38558 | 0.66 | 0.664857 |
Target: 5'- cGGugccUGCCUUGUCggcgugaucGCGCCGUCGGc -3' miRNA: 3'- uCCuu--ACGGAACGGaa-------CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 38920 | 0.69 | 0.512961 |
Target: 5'- cAGGGccaCCagGCCgucggGCACCGCCAGg -3' miRNA: 3'- -UCCUuacGGaaCGGaa---CGUGGCGGUC- -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40048 | 0.7 | 0.471836 |
Target: 5'- aGGGGAUGgCgcuCCggGCACCGCCAu -3' miRNA: 3'- -UCCUUACgGaacGGaaCGUGGCGGUc -5' |
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18980 | 3' | -55.9 | NC_004684.1 | + | 40118 | 0.67 | 0.598975 |
Target: 5'- gGGGAucgGCCcgGUC-UGCGCCGCUAa -3' miRNA: 3'- -UCCUua-CGGaaCGGaACGUGGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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