miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 3' -55.9 NC_004684.1 + 40405 0.67 0.609939
Target:  5'- gAGGucGUGCC-UGCCggGCGCuaCGCCAu -3'
miRNA:   3'- -UCCu-UACGGaACGGaaCGUG--GCGGUc -5'
18980 3' -55.9 NC_004684.1 + 8019 0.67 0.620923
Target:  5'- cGGAagGCCUUGCCUggguucucCACCgGCUGGc -3'
miRNA:   3'- uCCUuaCGGAACGGAac------GUGG-CGGUC- -5'
18980 3' -55.9 NC_004684.1 + 25417 0.67 0.620923
Target:  5'- cGGGGAgGCC--GCCauaCGCCGCCAGg -3'
miRNA:   3'- -UCCUUaCGGaaCGGaacGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 67018 0.67 0.631916
Target:  5'- cGGAG-GCCUUcGCCgagGUugugGCCGCCAa -3'
miRNA:   3'- uCCUUaCGGAA-CGGaa-CG----UGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 21074 0.67 0.631916
Target:  5'- cAGGAucggGCCga-CC-UGCGCCGCCGc -3'
miRNA:   3'- -UCCUua--CGGaacGGaACGUGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 2771 0.67 0.636314
Target:  5'- cGGGGAUGCggUGCCcggcgcugaaauggUGCuugACCGUCAGg -3'
miRNA:   3'- -UCCUUACGgaACGGa-------------ACG---UGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 33931 0.67 0.64291
Target:  5'- uGGuugGCCccgUUGCCgc-CGCCGCCGGg -3'
miRNA:   3'- uCCuuaCGG---AACGGaacGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 870 0.68 0.566286
Target:  5'- gAGGGccaucauucacgGUGCCUcggcggUGUCcaggaGCGCCGCCAGg -3'
miRNA:   3'- -UCCU------------UACGGA------ACGGaa---CGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 32780 0.68 0.566286
Target:  5'- cGGAGacguugcgguUGCCgagGCCguagccaUGcCGCCGCCAGg -3'
miRNA:   3'- uCCUU----------ACGGaa-CGGa------AC-GUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 20547 0.68 0.554408
Target:  5'- uGGGggUGCgcagcauCUUcGCCgccgUGCACagCGCCAGg -3'
miRNA:   3'- -UCCuuACG-------GAA-CGGa---ACGUG--GCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 9579 0.72 0.343008
Target:  5'- cGGGAGUGaCCggguacggcUGCgCUUGC-CCGCCAGc -3'
miRNA:   3'- -UCCUUAC-GGa--------ACG-GAACGuGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 22923 0.72 0.351328
Target:  5'- uGGccaGCCcgGCC-UGCACCGCCGGg -3'
miRNA:   3'- uCCuuaCGGaaCGGaACGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 22387 0.7 0.442115
Target:  5'- cGGggUucggcaccgccGCCgcgcggGCCUUGgcCGCCGCCAGg -3'
miRNA:   3'- uCCuuA-----------CGGaa----CGGAAC--GUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 30817 0.7 0.451906
Target:  5'- cGGAcgGCgaUGCgaUGC-CCGCCAGc -3'
miRNA:   3'- uCCUuaCGgaACGgaACGuGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 40048 0.7 0.471836
Target:  5'- aGGGGAUGgCgcuCCggGCACCGCCAu -3'
miRNA:   3'- -UCCUUACgGaacGGaaCGUGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 19773 0.69 0.481966
Target:  5'- cGGccagGCCUUGCCgccGCGCCGgUAGa -3'
miRNA:   3'- uCCuua-CGGAACGGaa-CGUGGCgGUC- -5'
18980 3' -55.9 NC_004684.1 + 22813 0.69 0.502534
Target:  5'- cGGucgcgcGUGCCagccacgGCCUuggccacguccUGCGCCGCCGGg -3'
miRNA:   3'- uCCu-----UACGGaa-----CGGA-----------ACGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 38920 0.69 0.512961
Target:  5'- cAGGGccaCCagGCCgucggGCACCGCCAGg -3'
miRNA:   3'- -UCCUuacGGaaCGGaa---CGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 8722 0.69 0.530886
Target:  5'- cGGGggUGCCgaggaucggcggUGCCggUGCACCgggcuuguucgagGCCAc -3'
miRNA:   3'- -UCCuuACGGa-----------ACGGa-ACGUGG-------------CGGUc -5'
18980 3' -55.9 NC_004684.1 + 3975 0.69 0.534073
Target:  5'- gAGaGGAUGUCUgaccagGCCUUgGCACUGCgCAGc -3'
miRNA:   3'- -UC-CUUACGGAa-----CGGAA-CGUGGCG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.