Results 41 - 53 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 38920 | 0.69 | 0.512961 |
Target: 5'- cAGGGccaCCagGCCgucggGCACCGCCAGg -3' miRNA: 3'- -UCCUuacGGaaCGGaa---CGUGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 22813 | 0.69 | 0.502534 |
Target: 5'- cGGucgcgcGUGCCagccacgGCCUuggccacguccUGCGCCGCCGGg -3' miRNA: 3'- uCCu-----UACGGaa-----CGGA-----------ACGUGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 19773 | 0.69 | 0.481966 |
Target: 5'- cGGccagGCCUUGCCgccGCGCCGgUAGa -3' miRNA: 3'- uCCuua-CGGAACGGaa-CGUGGCgGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 40162 | 0.7 | 0.475875 |
Target: 5'- cAGGAcgGCCUUGCUggcggcgaagcucaUGCGCUGCUc- -3' miRNA: 3'- -UCCUuaCGGAACGGa-------------ACGUGGCGGuc -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 40048 | 0.7 | 0.471836 |
Target: 5'- aGGGGAUGgCgcuCCggGCACCGCCAu -3' miRNA: 3'- -UCCUUACgGaacGGaaCGUGGCGGUc -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 30817 | 0.7 | 0.451906 |
Target: 5'- cGGAcgGCgaUGCgaUGC-CCGCCAGc -3' miRNA: 3'- uCCUuaCGgaACGgaACGuGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 22387 | 0.7 | 0.442115 |
Target: 5'- cGGggUucggcaccgccGCCgcgcggGCCUUGgcCGCCGCCAGg -3' miRNA: 3'- uCCuuA-----------CGGaa----CGGAAC--GUGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 61924 | 0.7 | 0.432445 |
Target: 5'- cGGggUGCgg-GCCacgGCAcCCGCCGGg -3' miRNA: 3'- uCCuuACGgaaCGGaa-CGU-GGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 10007 | 0.71 | 0.377138 |
Target: 5'- cGGAAcUGCCggaccUGCCgcGCGCCGaCCGGg -3' miRNA: 3'- uCCUU-ACGGa----ACGGaaCGUGGC-GGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 22923 | 0.72 | 0.351328 |
Target: 5'- uGGccaGCCcgGCC-UGCACCGCCGGg -3' miRNA: 3'- uCCuuaCGGaaCGGaACGUGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 9579 | 0.72 | 0.343008 |
Target: 5'- cGGGAGUGaCCggguacggcUGCgCUUGC-CCGCCAGc -3' miRNA: 3'- -UCCUUAC-GGa--------ACG-GAACGuGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 37116 | 0.76 | 0.195599 |
Target: 5'- gAGGAggGCUggcgUGCCgccagcgcacUGCGCCGCCAGu -3' miRNA: 3'- -UCCUuaCGGa---ACGGa---------ACGUGGCGGUC- -5' |
|||||||
18980 | 3' | -55.9 | NC_004684.1 | + | 3632 | 0.97 | 0.006975 |
Target: 5'- cAGGAAUGCCUUGCCUUGCACCG-CAGg -3' miRNA: 3'- -UCCUUACGGAACGGAACGUGGCgGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home