miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 3' -55.9 NC_004684.1 + 67018 0.67 0.631916
Target:  5'- cGGAG-GCCUUcGCCgagGUugugGCCGCCAa -3'
miRNA:   3'- uCCUUaCGGAA-CGGaa-CG----UGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 21074 0.67 0.631916
Target:  5'- cAGGAucggGCCga-CC-UGCGCCGCCGc -3'
miRNA:   3'- -UCCUua--CGGaacGGaACGUGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 25422 0.67 0.630817
Target:  5'- uGGggUGCCUccgaccuUGCCgcugGC-CUGUCGGa -3'
miRNA:   3'- uCCuuACGGA-------ACGGaa--CGuGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 59515 0.67 0.620923
Target:  5'- cGGGcgcGUCguagGCCUgcgcacagguccUGCACCGCCAGc -3'
miRNA:   3'- -UCCuuaCGGaa--CGGA------------ACGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 8019 0.67 0.620923
Target:  5'- cGGAagGCCUUGCCUggguucucCACCgGCUGGc -3'
miRNA:   3'- uCCUuaCGGAACGGAac------GUGG-CGGUC- -5'
18980 3' -55.9 NC_004684.1 + 25417 0.67 0.620923
Target:  5'- cGGGGAgGCC--GCCauaCGCCGCCAGg -3'
miRNA:   3'- -UCCUUaCGGaaCGGaacGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 13241 0.67 0.620923
Target:  5'- gGGGAGUuCCgugGCCagGCcgugACCGCCAGc -3'
miRNA:   3'- -UCCUUAcGGaa-CGGaaCG----UGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 40405 0.67 0.609939
Target:  5'- gAGGucGUGCC-UGCCggGCGCuaCGCCAu -3'
miRNA:   3'- -UCCu-UACGGaACGGaaCGUG--GCGGUc -5'
18980 3' -55.9 NC_004684.1 + 58935 0.67 0.598975
Target:  5'- cGGGGAcaacaGCCagGCCUUGCGCCggGCCc- -3'
miRNA:   3'- -UCCUUa----CGGaaCGGAACGUGG--CGGuc -5'
18980 3' -55.9 NC_004684.1 + 18522 0.67 0.598975
Target:  5'- cGGGA-GCCacgucgGCCgccggUGCGcCCGCCGGg -3'
miRNA:   3'- uCCUUaCGGaa----CGGa----ACGU-GGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 40118 0.67 0.598975
Target:  5'- gGGGAucgGCCcgGUC-UGCGCCGCUAa -3'
miRNA:   3'- -UCCUua-CGGaaCGGaACGUGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 22482 0.68 0.588039
Target:  5'- uAGGAAUccGCCgacgccGCCUgcacgucCACCGCCAGc -3'
miRNA:   3'- -UCCUUA--CGGaa----CGGAac-----GUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 18611 0.68 0.577139
Target:  5'- --cGGUGaCCUUGCCgUUG-ACCGCCAGc -3'
miRNA:   3'- uccUUAC-GGAACGG-AACgUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 32780 0.68 0.566286
Target:  5'- cGGAGacguugcgguUGCCgagGCCguagccaUGcCGCCGCCAGg -3'
miRNA:   3'- uCCUU----------ACGGaa-CGGa------AC-GUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 870 0.68 0.566286
Target:  5'- gAGGGccaucauucacgGUGCCUcggcggUGUCcaggaGCGCCGCCAGg -3'
miRNA:   3'- -UCCU------------UACGGA------ACGGaa---CGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 20547 0.68 0.554408
Target:  5'- uGGGggUGCgcagcauCUUcGCCgccgUGCACagCGCCAGg -3'
miRNA:   3'- -UCCuuACG-------GAA-CGGa---ACGUG--GCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 12891 0.69 0.534073
Target:  5'- gGGGAGccUGCgCUcgccgccagcggUGCCggUGCGCCGUCGGc -3'
miRNA:   3'- -UCCUU--ACG-GA------------ACGGa-ACGUGGCGGUC- -5'
18980 3' -55.9 NC_004684.1 + 3975 0.69 0.534073
Target:  5'- gAGaGGAUGUCUgaccagGCCUUgGCACUGCgCAGc -3'
miRNA:   3'- -UC-CUUACGGAa-----CGGAA-CGUGGCG-GUC- -5'
18980 3' -55.9 NC_004684.1 + 66979 0.69 0.534073
Target:  5'- cGGggUGCCagucGCCcagcUUGC-CCGCCAc -3'
miRNA:   3'- uCCuuACGGaa--CGG----AACGuGGCGGUc -5'
18980 3' -55.9 NC_004684.1 + 8722 0.69 0.530886
Target:  5'- cGGGggUGCCgaggaucggcggUGCCggUGCACCgggcuuguucgagGCCAc -3'
miRNA:   3'- -UCCuuACGGa-----------ACGGa-ACGUGG-------------CGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.