miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 5' -59.4 NC_004684.1 + 51638 0.66 0.579687
Target:  5'- cACCUuUCGGUGuacGCGGCcaGUCgCUGGg -3'
miRNA:   3'- -UGGGcAGCCGCuaaCGCCG--CAG-GACC- -5'
18980 5' -59.4 NC_004684.1 + 53523 0.73 0.249044
Target:  5'- gGCCCaggaCGGUGucgucggUGCGGCGUgCCUGGa -3'
miRNA:   3'- -UGGGca--GCCGCua-----ACGCCGCA-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 57355 0.7 0.371301
Target:  5'- cCCCGcCGGUGAggGCGGgGUCUUu- -3'
miRNA:   3'- uGGGCaGCCGCUaaCGCCgCAGGAcc -5'
18980 5' -59.4 NC_004684.1 + 59351 0.7 0.354985
Target:  5'- -gCCGUUGGUG-UUGaacacgcgcaCGGUGUCCUGGa -3'
miRNA:   3'- ugGGCAGCCGCuAAC----------GCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 59954 0.68 0.441474
Target:  5'- uGCCCGgcaccgaccUGGCcgccgugGCGGCGUUCUGGu -3'
miRNA:   3'- -UGGGCa--------GCCGcuaa---CGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 60087 0.69 0.432293
Target:  5'- uGCgCCGUccaauacugCGGCGcgUGCGGCaagGUCCgGGu -3'
miRNA:   3'- -UG-GGCA---------GCCGCuaACGCCG---CAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 61176 0.67 0.497759
Target:  5'- gGCCagGUCGGCGGggUUGguggccuCGGCGUacaCCUGGc -3'
miRNA:   3'- -UGGg-CAGCCGCU--AAC-------GCCGCA---GGACC- -5'
18980 5' -59.4 NC_004684.1 + 61331 0.67 0.548862
Target:  5'- cGCCC-UCGGCGGcguagGUGGCGgCCaGGu -3'
miRNA:   3'- -UGGGcAGCCGCUaa---CGCCGCaGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 62385 0.69 0.432293
Target:  5'- gGCCCGcgCGGCGcuggaGCaGCG-CCUGGa -3'
miRNA:   3'- -UGGGCa-GCCGCuaa--CGcCGCaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 64188 0.68 0.460163
Target:  5'- cGCaCGUCGGCG-UUGcCGGUGUgccggaucgacaCCUGGg -3'
miRNA:   3'- -UGgGCAGCCGCuAAC-GCCGCA------------GGACC- -5'
18980 5' -59.4 NC_004684.1 + 65590 0.69 0.405433
Target:  5'- gGCC--UCGGUcauGAgccgcacgGCGGCGUCCUGGu -3'
miRNA:   3'- -UGGgcAGCCG---CUaa------CGCCGCAGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.