Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 5' | -59.4 | NC_004684.1 | + | 31188 | 0.66 | 0.572456 |
Target: 5'- cGCCUGcgCGGCGuccugccagcccucgGCGGCacguUCCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCuaa------------CGCCGc---AGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 33819 | 0.66 | 0.600443 |
Target: 5'- --gCGUCGGCGg--GCGGUGUgCCcGGc -3' miRNA: 3'- uggGCAGCCGCuaaCGCCGCA-GGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 33849 | 0.7 | 0.379648 |
Target: 5'- uCCCGUUGuaGCuGAggucgGgGGCGUCCUGGc -3' miRNA: 3'- uGGGCAGC--CG-CUaa---CgCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 34320 | 0.73 | 0.220032 |
Target: 5'- cGCCCGUUGGCccg-GCGGUGUCCc-- -3' miRNA: 3'- -UGGGCAGCCGcuaaCGCCGCAGGacc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 35434 | 0.73 | 0.249044 |
Target: 5'- cACCgCGUCcacuuGGCGAaUGCGGUGUgCUUGGg -3' miRNA: 3'- -UGG-GCAG-----CCGCUaACGCCGCA-GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 37433 | 0.72 | 0.281145 |
Target: 5'- cGCUCGcCGGuCGGUUGCGGCGggcuuUCCaGGu -3' miRNA: 3'- -UGGGCaGCC-GCUAACGCCGC-----AGGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 39063 | 0.66 | 0.579687 |
Target: 5'- gACCCG-CGcGCGAacaccucggUGCGGUG-CUUGGu -3' miRNA: 3'- -UGGGCaGC-CGCUa--------ACGCCGCaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 39321 | 0.67 | 0.495797 |
Target: 5'- gACCCGUCGGCGcgcaagaucaGCGaGCGguaccccgaccccUUCUGGg -3' miRNA: 3'- -UGGGCAGCCGCuaa-------CGC-CGC-------------AGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 41417 | 0.72 | 0.281145 |
Target: 5'- -gCCGUCGGCGGUcGCGGUG-CCg-- -3' miRNA: 3'- ugGGCAGCCGCUAaCGCCGCaGGacc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 41426 | 0.71 | 0.309126 |
Target: 5'- cCCCGU-GGCGGUggUGCGGCGgugCCgccGGu -3' miRNA: 3'- uGGGCAgCCGCUA--ACGCCGCa--GGa--CC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 41988 | 0.7 | 0.379648 |
Target: 5'- uGCCCGcgCGGUGGccGCuGGCGacaaccUCCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCUaaCG-CCGC------AGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 45141 | 0.67 | 0.528597 |
Target: 5'- cACCCaggccUCGGCGAagucGaCGGCGUCCUccaGGu -3' miRNA: 3'- -UGGGc----AGCCGCUaa--C-GCCGCAGGA---CC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 45868 | 0.66 | 0.590049 |
Target: 5'- --gCGUCGGCGAUcaugUGCGcGCcGUCCacgcUGGc -3' miRNA: 3'- uggGCAGCCGCUA----ACGC-CG-CAGG----ACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 46590 | 0.69 | 0.38812 |
Target: 5'- cGCUCGacggCGGCGAcgGCGGCGgUUUGGu -3' miRNA: 3'- -UGGGCa---GCCGCUaaCGCCGCaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 48898 | 0.68 | 0.460163 |
Target: 5'- gGCCUGUUGGaGAacgGCGGCcuGUCCUGc -3' miRNA: 3'- -UGGGCAGCCgCUaa-CGCCG--CAGGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 49179 | 0.69 | 0.396716 |
Target: 5'- uCUCGgCGGCGGcgGCGGCGgcggCCUGc -3' miRNA: 3'- uGGGCaGCCGCUaaCGCCGCa---GGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 49325 | 0.71 | 0.309126 |
Target: 5'- gACCCGUCGGCGGccaugGuCGGCG-CUgacgGGa -3' miRNA: 3'- -UGGGCAGCCGCUaa---C-GCCGCaGGa---CC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 49675 | 0.72 | 0.255213 |
Target: 5'- gGCCCauUCGGCGAUaaCGGUGUCCaGGg -3' miRNA: 3'- -UGGGc-AGCCGCUAacGCCGCAGGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 50020 | 0.71 | 0.301937 |
Target: 5'- cGCaCCGUCGGCGGcagcGUGGCcGgugCCUGGc -3' miRNA: 3'- -UG-GGCAGCCGCUaa--CGCCG-Ca--GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 50329 | 0.68 | 0.479262 |
Target: 5'- cGCCCGgccaGGCGg--GCGGCcUCCuUGGc -3' miRNA: 3'- -UGGGCag--CCGCuaaCGCCGcAGG-ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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