Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 5' | -59.4 | NC_004684.1 | + | 41988 | 0.7 | 0.379648 |
Target: 5'- uGCCCGcgCGGUGGccGCuGGCGacaaccUCCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCUaaCG-CCGC------AGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 33849 | 0.7 | 0.379648 |
Target: 5'- uCCCGUUGuaGCuGAggucgGgGGCGUCCUGGc -3' miRNA: 3'- uGGGCAGC--CG-CUaa---CgCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 46590 | 0.69 | 0.38812 |
Target: 5'- cGCUCGacggCGGCGAcgGCGGCGgUUUGGu -3' miRNA: 3'- -UGGGCa---GCCGCUaaCGCCGCaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 49179 | 0.69 | 0.396716 |
Target: 5'- uCUCGgCGGCGGcgGCGGCGgcggCCUGc -3' miRNA: 3'- uGGGCaGCCGCUaaCGCCGCa---GGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 65590 | 0.69 | 0.405433 |
Target: 5'- gGCC--UCGGUcauGAgccgcacgGCGGCGUCCUGGu -3' miRNA: 3'- -UGGgcAGCCG---CUaa------CGCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 62385 | 0.69 | 0.432293 |
Target: 5'- gGCCCGcgCGGCGcuggaGCaGCG-CCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCuaa--CGcCGCaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 60087 | 0.69 | 0.432293 |
Target: 5'- uGCgCCGUccaauacugCGGCGcgUGCGGCaagGUCCgGGu -3' miRNA: 3'- -UG-GGCA---------GCCGCuaACGCCG---CAGGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 26417 | 0.68 | 0.441474 |
Target: 5'- cACCgCGUCGGCaAUcgGCGGCccggcggCCUGGc -3' miRNA: 3'- -UGG-GCAGCCGcUAa-CGCCGca-----GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 59954 | 0.68 | 0.441474 |
Target: 5'- uGCCCGgcaccgaccUGGCcgccgugGCGGCGUUCUGGu -3' miRNA: 3'- -UGGGCa--------GCCGcuaa---CGCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 24932 | 0.68 | 0.445178 |
Target: 5'- gGCCCGgUGGCGcUaccgcugccgcccugUGUGGUGUCCUGc -3' miRNA: 3'- -UGGGCaGCCGCuA---------------ACGCCGCAGGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 4176 | 0.68 | 0.460163 |
Target: 5'- gGCCCGguugcgccCGGCGGgcGCGGUgGUUCUGa -3' miRNA: 3'- -UGGGCa-------GCCGCUaaCGCCG-CAGGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 64188 | 0.68 | 0.460163 |
Target: 5'- cGCaCGUCGGCG-UUGcCGGUGUgccggaucgacaCCUGGg -3' miRNA: 3'- -UGgGCAGCCGCuAAC-GCCGCA------------GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 48898 | 0.68 | 0.460163 |
Target: 5'- gGCCUGUUGGaGAacgGCGGCcuGUCCUGc -3' miRNA: 3'- -UGGGCAGCCgCUaa-CGCCG--CAGGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 19714 | 0.68 | 0.469663 |
Target: 5'- gACCUGggacggccacUCGGUGAgcGCGGCa-CCUGGa -3' miRNA: 3'- -UGGGC----------AGCCGCUaaCGCCGcaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 25991 | 0.68 | 0.479262 |
Target: 5'- aACCCGcUGGCGcuccugGCGGCGgCCgGGu -3' miRNA: 3'- -UGGGCaGCCGCuaa---CGCCGCaGGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 50329 | 0.68 | 0.479262 |
Target: 5'- cGCCCGgccaGGCGg--GCGGCcUCCuUGGc -3' miRNA: 3'- -UGGGCag--CCGCuaaCGCCGcAGG-ACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 29350 | 0.68 | 0.488957 |
Target: 5'- -gCUGUCGGCGGUcgGCGGUGaugCCUugaauGGg -3' miRNA: 3'- ugGGCAGCCGCUAa-CGCCGCa--GGA-----CC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 39321 | 0.67 | 0.495797 |
Target: 5'- gACCCGUCGGCGcgcaagaucaGCGaGCGguaccccgaccccUUCUGGg -3' miRNA: 3'- -UGGGCAGCCGCuaa-------CGC-CGC-------------AGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 61176 | 0.67 | 0.497759 |
Target: 5'- gGCCagGUCGGCGGggUUGguggccuCGGCGUacaCCUGGc -3' miRNA: 3'- -UGGg-CAGCCGCU--AAC-------GCCGCA---GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 19456 | 0.67 | 0.498742 |
Target: 5'- uGCCCGggCGGCGGUggcccGCGcgacauGCGccCCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCUAa----CGC------CGCa-GGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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