miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 5' -59.4 NC_004684.1 + 3599 1.09 0.000658
Target:  5'- cACCCGUCGGCGAUUGCGGCGUCCUGGc -3'
miRNA:   3'- -UGGGCAGCCGCUAACGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 27687 0.77 0.131367
Target:  5'- gACCCGUcCGGUGAUUGCGGC---CUGGu -3'
miRNA:   3'- -UGGGCA-GCCGCUAACGCCGcagGACC- -5'
18980 5' -59.4 NC_004684.1 + 22173 0.74 0.214587
Target:  5'- -gUCGUUGGCGGcgcgUGCGGUGUCCcGGu -3'
miRNA:   3'- ugGGCAGCCGCUa---ACGCCGCAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 34320 0.73 0.220032
Target:  5'- cGCCCGUUGGCccg-GCGGUGUCCc-- -3'
miRNA:   3'- -UGGGCAGCCGcuaaCGCCGCAGGacc -5'
18980 5' -59.4 NC_004684.1 + 27787 0.73 0.225594
Target:  5'- cGCCCGaCGGUGcgcgGCGGUucgGUCCUGGc -3'
miRNA:   3'- -UGGGCaGCCGCuaa-CGCCG---CAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 35434 0.73 0.249044
Target:  5'- cACCgCGUCcacuuGGCGAaUGCGGUGUgCUUGGg -3'
miRNA:   3'- -UGG-GCAG-----CCGCUaACGCCGCA-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 21552 0.73 0.249044
Target:  5'- cACCuCGUCGGUGGUcGgGGUGUCCUc- -3'
miRNA:   3'- -UGG-GCAGCCGCUAaCgCCGCAGGAcc -5'
18980 5' -59.4 NC_004684.1 + 53523 0.73 0.249044
Target:  5'- gGCCCaggaCGGUGucgucggUGCGGCGUgCCUGGa -3'
miRNA:   3'- -UGGGca--GCCGCua-----ACGCCGCA-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 29532 0.72 0.255213
Target:  5'- cGCUgGUCGGUGGUUGcCGGUGUaccgauUCUGGg -3'
miRNA:   3'- -UGGgCAGCCGCUAAC-GCCGCA------GGACC- -5'
18980 5' -59.4 NC_004684.1 + 49675 0.72 0.255213
Target:  5'- gGCCCauUCGGCGAUaaCGGUGUCCaGGg -3'
miRNA:   3'- -UGGGc-AGCCGCUAacGCCGCAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 9978 0.72 0.273153
Target:  5'- cACUCGUCGGCGGccugcuccugcGCGGCGUCg-GGa -3'
miRNA:   3'- -UGGGCAGCCGCUaa---------CGCCGCAGgaCC- -5'
18980 5' -59.4 NC_004684.1 + 41417 0.72 0.281145
Target:  5'- -gCCGUCGGCGGUcGCGGUG-CCg-- -3'
miRNA:   3'- ugGGCAGCCGCUAaCGCCGCaGGacc -5'
18980 5' -59.4 NC_004684.1 + 37433 0.72 0.281145
Target:  5'- cGCUCGcCGGuCGGUUGCGGCGggcuuUCCaGGu -3'
miRNA:   3'- -UGGGCaGCC-GCUAACGCCGC-----AGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 50020 0.71 0.301937
Target:  5'- cGCaCCGUCGGCGGcagcGUGGCcGgugCCUGGc -3'
miRNA:   3'- -UG-GGCAGCCGCUaa--CGCCG-Ca--GGACC- -5'
18980 5' -59.4 NC_004684.1 + 41426 0.71 0.309126
Target:  5'- cCCCGU-GGCGGUggUGCGGCGgugCCgccGGu -3'
miRNA:   3'- uGGGCAgCCGCUA--ACGCCGCa--GGa--CC- -5'
18980 5' -59.4 NC_004684.1 + 49325 0.71 0.309126
Target:  5'- gACCCGUCGGCGGccaugGuCGGCG-CUgacgGGa -3'
miRNA:   3'- -UGGGCAGCCGCUaa---C-GCCGCaGGa---CC- -5'
18980 5' -59.4 NC_004684.1 + 22443 0.71 0.323894
Target:  5'- -gCCGUCGGCGcg-GCGGCGaUCCc-- -3'
miRNA:   3'- ugGGCAGCCGCuaaCGCCGC-AGGacc -5'
18980 5' -59.4 NC_004684.1 + 22339 0.7 0.336082
Target:  5'- cACCCGguacaggcgguggCGGCGGcgGCGGCGgucgCgCUGGc -3'
miRNA:   3'- -UGGGCa------------GCCGCUaaCGCCGCa---G-GACC- -5'
18980 5' -59.4 NC_004684.1 + 59351 0.7 0.354985
Target:  5'- -gCCGUUGGUG-UUGaacacgcgcaCGGUGUCCUGGa -3'
miRNA:   3'- ugGGCAGCCGCuAAC----------GCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 57355 0.7 0.371301
Target:  5'- cCCCGcCGGUGAggGCGGgGUCUUu- -3'
miRNA:   3'- uGGGCaGCCGCUaaCGCCgCAGGAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.