miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 5' -59.4 NC_004684.1 + 747 0.67 0.548862
Target:  5'- cACgCUGUCGuGCGcgU-CGGUGUCCUuGGg -3'
miRNA:   3'- -UG-GGCAGC-CGCuaAcGCCGCAGGA-CC- -5'
18980 5' -59.4 NC_004684.1 + 3599 1.09 0.000658
Target:  5'- cACCCGUCGGCGAUUGCGGCGUCCUGGc -3'
miRNA:   3'- -UGGGCAGCCGCUAACGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 4176 0.68 0.460163
Target:  5'- gGCCCGguugcgccCGGCGGgcGCGGUgGUUCUGa -3'
miRNA:   3'- -UGGGCa-------GCCGCUaaCGCCG-CAGGACc -5'
18980 5' -59.4 NC_004684.1 + 9978 0.72 0.273153
Target:  5'- cACUCGUCGGCGGccugcuccugcGCGGCGUCg-GGa -3'
miRNA:   3'- -UGGGCAGCCGCUaa---------CGCCGCAGgaCC- -5'
18980 5' -59.4 NC_004684.1 + 10107 0.66 0.569364
Target:  5'- uCCCgGUCGGCGc--GCGGCagGUCC-GGc -3'
miRNA:   3'- uGGG-CAGCCGCuaaCGCCG--CAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 12960 0.66 0.559087
Target:  5'- cCCCGgCGGCGGccucgGCGGUGgcggCCUcGGc -3'
miRNA:   3'- uGGGCaGCCGCUaa---CGCCGCa---GGA-CC- -5'
18980 5' -59.4 NC_004684.1 + 19456 0.67 0.498742
Target:  5'- uGCCCGggCGGCGGUggcccGCGcgacauGCGccCCUGGa -3'
miRNA:   3'- -UGGGCa-GCCGCUAa----CGC------CGCa-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 19714 0.68 0.469663
Target:  5'- gACCUGggacggccacUCGGUGAgcGCGGCa-CCUGGa -3'
miRNA:   3'- -UGGGC----------AGCCGCUaaCGCCGcaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 21552 0.73 0.249044
Target:  5'- cACCuCGUCGGUGGUcGgGGUGUCCUc- -3'
miRNA:   3'- -UGG-GCAGCCGCUAaCgCCGCAGGAcc -5'
18980 5' -59.4 NC_004684.1 + 22173 0.74 0.214587
Target:  5'- -gUCGUUGGCGGcgcgUGCGGUGUCCcGGu -3'
miRNA:   3'- ugGGCAGCCGCUa---ACGCCGCAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 22339 0.7 0.336082
Target:  5'- cACCCGguacaggcgguggCGGCGGcgGCGGCGgucgCgCUGGc -3'
miRNA:   3'- -UGGGCa------------GCCGCUaaCGCCGCa---G-GACC- -5'
18980 5' -59.4 NC_004684.1 + 22443 0.71 0.323894
Target:  5'- -gCCGUCGGCGcg-GCGGCGaUCCc-- -3'
miRNA:   3'- ugGGCAGCCGCuaaCGCCGC-AGGacc -5'
18980 5' -59.4 NC_004684.1 + 24932 0.68 0.445178
Target:  5'- gGCCCGgUGGCGcUaccgcugccgcccugUGUGGUGUCCUGc -3'
miRNA:   3'- -UGGGCaGCCGCuA---------------ACGCCGCAGGACc -5'
18980 5' -59.4 NC_004684.1 + 25991 0.68 0.479262
Target:  5'- aACCCGcUGGCGcuccugGCGGCGgCCgGGu -3'
miRNA:   3'- -UGGGCaGCCGCuaa---CGCCGCaGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 26417 0.68 0.441474
Target:  5'- cACCgCGUCGGCaAUcgGCGGCccggcggCCUGGc -3'
miRNA:   3'- -UGG-GCAGCCGcUAa-CGCCGca-----GGACC- -5'
18980 5' -59.4 NC_004684.1 + 27687 0.77 0.131367
Target:  5'- gACCCGUcCGGUGAUUGCGGC---CUGGu -3'
miRNA:   3'- -UGGGCA-GCCGCUAACGCCGcagGACC- -5'
18980 5' -59.4 NC_004684.1 + 27787 0.73 0.225594
Target:  5'- cGCCCGaCGGUGcgcgGCGGUucgGUCCUGGc -3'
miRNA:   3'- -UGGGCaGCCGCuaa-CGCCG---CAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 29350 0.68 0.488957
Target:  5'- -gCUGUCGGCGGUcgGCGGUGaugCCUugaauGGg -3'
miRNA:   3'- ugGGCAGCCGCUAa-CGCCGCa--GGA-----CC- -5'
18980 5' -59.4 NC_004684.1 + 29532 0.72 0.255213
Target:  5'- cGCUgGUCGGUGGUUGcCGGUGUaccgauUCUGGg -3'
miRNA:   3'- -UGGgCAGCCGCUAAC-GCCGCA------GGACC- -5'
18980 5' -59.4 NC_004684.1 + 30160 0.67 0.528597
Target:  5'- gGCCaGUgGGCGAUcaacgccgucgGCGGCGagCUGGu -3'
miRNA:   3'- -UGGgCAgCCGCUAa----------CGCCGCagGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.