miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18980 5' -59.4 NC_004684.1 + 65590 0.69 0.405433
Target:  5'- gGCC--UCGGUcauGAgccgcacgGCGGCGUCCUGGu -3'
miRNA:   3'- -UGGgcAGCCG---CUaa------CGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 64188 0.68 0.460163
Target:  5'- cGCaCGUCGGCG-UUGcCGGUGUgccggaucgacaCCUGGg -3'
miRNA:   3'- -UGgGCAGCCGCuAAC-GCCGCA------------GGACC- -5'
18980 5' -59.4 NC_004684.1 + 62385 0.69 0.432293
Target:  5'- gGCCCGcgCGGCGcuggaGCaGCG-CCUGGa -3'
miRNA:   3'- -UGGGCa-GCCGCuaa--CGcCGCaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 61331 0.67 0.548862
Target:  5'- cGCCC-UCGGCGGcguagGUGGCGgCCaGGu -3'
miRNA:   3'- -UGGGcAGCCGCUaa---CGCCGCaGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 61176 0.67 0.497759
Target:  5'- gGCCagGUCGGCGGggUUGguggccuCGGCGUacaCCUGGc -3'
miRNA:   3'- -UGGg-CAGCCGCU--AAC-------GCCGCA---GGACC- -5'
18980 5' -59.4 NC_004684.1 + 60087 0.69 0.432293
Target:  5'- uGCgCCGUccaauacugCGGCGcgUGCGGCaagGUCCgGGu -3'
miRNA:   3'- -UG-GGCA---------GCCGCuaACGCCG---CAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 59954 0.68 0.441474
Target:  5'- uGCCCGgcaccgaccUGGCcgccgugGCGGCGUUCUGGu -3'
miRNA:   3'- -UGGGCa--------GCCGcuaa---CGCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 59351 0.7 0.354985
Target:  5'- -gCCGUUGGUG-UUGaacacgcgcaCGGUGUCCUGGa -3'
miRNA:   3'- ugGGCAGCCGCuAAC----------GCCGCAGGACC- -5'
18980 5' -59.4 NC_004684.1 + 57355 0.7 0.371301
Target:  5'- cCCCGcCGGUGAggGCGGgGUCUUu- -3'
miRNA:   3'- uGGGCaGCCGCUaaCGCCgCAGGAcc -5'
18980 5' -59.4 NC_004684.1 + 53523 0.73 0.249044
Target:  5'- gGCCCaggaCGGUGucgucggUGCGGCGUgCCUGGa -3'
miRNA:   3'- -UGGGca--GCCGCua-----ACGCCGCA-GGACC- -5'
18980 5' -59.4 NC_004684.1 + 51638 0.66 0.579687
Target:  5'- cACCUuUCGGUGuacGCGGCcaGUCgCUGGg -3'
miRNA:   3'- -UGGGcAGCCGCuaaCGCCG--CAG-GACC- -5'
18980 5' -59.4 NC_004684.1 + 50329 0.68 0.479262
Target:  5'- cGCCCGgccaGGCGg--GCGGCcUCCuUGGc -3'
miRNA:   3'- -UGGGCag--CCGCuaaCGCCGcAGG-ACC- -5'
18980 5' -59.4 NC_004684.1 + 50020 0.71 0.301937
Target:  5'- cGCaCCGUCGGCGGcagcGUGGCcGgugCCUGGc -3'
miRNA:   3'- -UG-GGCAGCCGCUaa--CGCCG-Ca--GGACC- -5'
18980 5' -59.4 NC_004684.1 + 49675 0.72 0.255213
Target:  5'- gGCCCauUCGGCGAUaaCGGUGUCCaGGg -3'
miRNA:   3'- -UGGGc-AGCCGCUAacGCCGCAGGaCC- -5'
18980 5' -59.4 NC_004684.1 + 49325 0.71 0.309126
Target:  5'- gACCCGUCGGCGGccaugGuCGGCG-CUgacgGGa -3'
miRNA:   3'- -UGGGCAGCCGCUaa---C-GCCGCaGGa---CC- -5'
18980 5' -59.4 NC_004684.1 + 49179 0.69 0.396716
Target:  5'- uCUCGgCGGCGGcgGCGGCGgcggCCUGc -3'
miRNA:   3'- uGGGCaGCCGCUaaCGCCGCa---GGACc -5'
18980 5' -59.4 NC_004684.1 + 48898 0.68 0.460163
Target:  5'- gGCCUGUUGGaGAacgGCGGCcuGUCCUGc -3'
miRNA:   3'- -UGGGCAGCCgCUaa-CGCCG--CAGGACc -5'
18980 5' -59.4 NC_004684.1 + 46590 0.69 0.38812
Target:  5'- cGCUCGacggCGGCGAcgGCGGCGgUUUGGu -3'
miRNA:   3'- -UGGGCa---GCCGCUaaCGCCGCaGGACC- -5'
18980 5' -59.4 NC_004684.1 + 45868 0.66 0.590049
Target:  5'- --gCGUCGGCGAUcaugUGCGcGCcGUCCacgcUGGc -3'
miRNA:   3'- uggGCAGCCGCUA----ACGC-CG-CAGG----ACC- -5'
18980 5' -59.4 NC_004684.1 + 45141 0.67 0.528597
Target:  5'- cACCCaggccUCGGCGAagucGaCGGCGUCCUccaGGu -3'
miRNA:   3'- -UGGGc----AGCCGCUaa--C-GCCGCAGGA---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.