Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18980 | 5' | -59.4 | NC_004684.1 | + | 4176 | 0.68 | 0.460163 |
Target: 5'- gGCCCGguugcgccCGGCGGgcGCGGUgGUUCUGa -3' miRNA: 3'- -UGGGCa-------GCCGCUaaCGCCG-CAGGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 24932 | 0.68 | 0.445178 |
Target: 5'- gGCCCGgUGGCGcUaccgcugccgcccugUGUGGUGUCCUGc -3' miRNA: 3'- -UGGGCaGCCGCuA---------------ACGCCGCAGGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 26417 | 0.68 | 0.441474 |
Target: 5'- cACCgCGUCGGCaAUcgGCGGCccggcggCCUGGc -3' miRNA: 3'- -UGG-GCAGCCGcUAa-CGCCGca-----GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 59954 | 0.68 | 0.441474 |
Target: 5'- uGCCCGgcaccgaccUGGCcgccgugGCGGCGUUCUGGu -3' miRNA: 3'- -UGGGCa--------GCCGcuaa---CGCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 62385 | 0.69 | 0.432293 |
Target: 5'- gGCCCGcgCGGCGcuggaGCaGCG-CCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCuaa--CGcCGCaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 60087 | 0.69 | 0.432293 |
Target: 5'- uGCgCCGUccaauacugCGGCGcgUGCGGCaagGUCCgGGu -3' miRNA: 3'- -UG-GGCA---------GCCGCuaACGCCG---CAGGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 65590 | 0.69 | 0.405433 |
Target: 5'- gGCC--UCGGUcauGAgccgcacgGCGGCGUCCUGGu -3' miRNA: 3'- -UGGgcAGCCG---CUaa------CGCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 49179 | 0.69 | 0.396716 |
Target: 5'- uCUCGgCGGCGGcgGCGGCGgcggCCUGc -3' miRNA: 3'- uGGGCaGCCGCUaaCGCCGCa---GGACc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 46590 | 0.69 | 0.38812 |
Target: 5'- cGCUCGacggCGGCGAcgGCGGCGgUUUGGu -3' miRNA: 3'- -UGGGCa---GCCGCUaaCGCCGCaGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 41988 | 0.7 | 0.379648 |
Target: 5'- uGCCCGcgCGGUGGccGCuGGCGacaaccUCCUGGa -3' miRNA: 3'- -UGGGCa-GCCGCUaaCG-CCGC------AGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 33849 | 0.7 | 0.379648 |
Target: 5'- uCCCGUUGuaGCuGAggucgGgGGCGUCCUGGc -3' miRNA: 3'- uGGGCAGC--CG-CUaa---CgCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 57355 | 0.7 | 0.371301 |
Target: 5'- cCCCGcCGGUGAggGCGGgGUCUUu- -3' miRNA: 3'- uGGGCaGCCGCUaaCGCCgCAGGAcc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 59351 | 0.7 | 0.354985 |
Target: 5'- -gCCGUUGGUG-UUGaacacgcgcaCGGUGUCCUGGa -3' miRNA: 3'- ugGGCAGCCGCuAAC----------GCCGCAGGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 22339 | 0.7 | 0.336082 |
Target: 5'- cACCCGguacaggcgguggCGGCGGcgGCGGCGgucgCgCUGGc -3' miRNA: 3'- -UGGGCa------------GCCGCUaaCGCCGCa---G-GACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 22443 | 0.71 | 0.323894 |
Target: 5'- -gCCGUCGGCGcg-GCGGCGaUCCc-- -3' miRNA: 3'- ugGGCAGCCGCuaaCGCCGC-AGGacc -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 41426 | 0.71 | 0.309126 |
Target: 5'- cCCCGU-GGCGGUggUGCGGCGgugCCgccGGu -3' miRNA: 3'- uGGGCAgCCGCUA--ACGCCGCa--GGa--CC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 49325 | 0.71 | 0.309126 |
Target: 5'- gACCCGUCGGCGGccaugGuCGGCG-CUgacgGGa -3' miRNA: 3'- -UGGGCAGCCGCUaa---C-GCCGCaGGa---CC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 50020 | 0.71 | 0.301937 |
Target: 5'- cGCaCCGUCGGCGGcagcGUGGCcGgugCCUGGc -3' miRNA: 3'- -UG-GGCAGCCGCUaa--CGCCG-Ca--GGACC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 37433 | 0.72 | 0.281145 |
Target: 5'- cGCUCGcCGGuCGGUUGCGGCGggcuuUCCaGGu -3' miRNA: 3'- -UGGGCaGCC-GCUAACGCCGC-----AGGaCC- -5' |
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18980 | 5' | -59.4 | NC_004684.1 | + | 41417 | 0.72 | 0.281145 |
Target: 5'- -gCCGUCGGCGGUcGCGGUG-CCg-- -3' miRNA: 3'- ugGGCAGCCGCUAaCGCCGCaGGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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