Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 58163 | 0.74 | 0.325299 |
Target: 5'- gGGGAGCcggugCGACuGUgCCGCCACCa -3' miRNA: 3'- gCUCUCGaa---GCUGuCAgGGUGGUGGg -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 37488 | 0.66 | 0.778129 |
Target: 5'- gGAG-GCcUCGu--GUacgaCCCGCCACCCg -3' miRNA: 3'- gCUCuCGaAGCuguCA----GGGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 66454 | 0.66 | 0.778129 |
Target: 5'- -cAGGGUggCGGCGuuGUCuccacgCCGCCACCCg -3' miRNA: 3'- gcUCUCGaaGCUGU--CAG------GGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 13476 | 0.66 | 0.768314 |
Target: 5'- cCGAGgacGGCaaCGGCAacCCCACCGCCg -3' miRNA: 3'- -GCUC---UCGaaGCUGUcaGGGUGGUGGg -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 40374 | 0.66 | 0.752336 |
Target: 5'- uGGGGGCcUCGGCGGUggcggCCUucggcaggccggucaGCCACUCg -3' miRNA: 3'- gCUCUCGaAGCUGUCA-----GGG---------------UGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 59452 | 0.66 | 0.748293 |
Target: 5'- cCGGuGuGCgccggUCGGCGGcgaugUCCACCACCUg -3' miRNA: 3'- -GCU-CuCGa----AGCUGUCa----GGGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 38367 | 0.67 | 0.727824 |
Target: 5'- aCGAGGGCgcggUCacCAGUCCCaagaucGCUACCg -3' miRNA: 3'- -GCUCUCGa---AGcuGUCAGGG------UGGUGGg -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 13721 | 0.67 | 0.696465 |
Target: 5'- cCGAcccaGGCgcugUCGGuCGGUgCCACCACCUc -3' miRNA: 3'- -GCUc---UCGa---AGCU-GUCAgGGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 25651 | 0.68 | 0.653871 |
Target: 5'- uCGAGAGCggCGGCGGUaCCgggcagggCGCgACCUa -3' miRNA: 3'- -GCUCUCGaaGCUGUCA-GG--------GUGgUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 52434 | 0.69 | 0.610968 |
Target: 5'- cCGGGGGUcUCGAU-GUCggCCGCCACCg -3' miRNA: 3'- -GCUCUCGaAGCUGuCAG--GGUGGUGGg -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 23940 | 0.7 | 0.505996 |
Target: 5'- -cGGAGCUgCG-CGGaCCCGCCugCCg -3' miRNA: 3'- gcUCUCGAaGCuGUCaGGGUGGugGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 24166 | 0.7 | 0.505996 |
Target: 5'- -cAGGGUccgcaGGCGGUgCCGCCGCCCa -3' miRNA: 3'- gcUCUCGaag--CUGUCAgGGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 44832 | 0.7 | 0.52649 |
Target: 5'- gCGAGcAGCgggUUGGCGGUccaucCCCACUGCUCg -3' miRNA: 3'- -GCUC-UCGa--AGCUGUCA-----GGGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 37574 | 0.7 | 0.553578 |
Target: 5'- cCGGGAGCUggaggugcccggcaUCGguaccguGCGGgCCCGgCCGCCCa -3' miRNA: 3'- -GCUCUCGA--------------AGC-------UGUCaGGGU-GGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 40472 | 0.7 | 0.556732 |
Target: 5'- uCGGGGGUcUCGGCGGUCugcgccgagugcgCCAgCACCUg -3' miRNA: 3'- -GCUCUCGaAGCUGUCAG-------------GGUgGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 35427 | 0.69 | 0.589585 |
Target: 5'- gCGGGAGg--CGAUGGUCCCGCCGgaCa -3' miRNA: 3'- -GCUCUCgaaGCUGUCAGGGUGGUggG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 22396 | 0.66 | 0.787801 |
Target: 5'- gGGGAGCaUCGGgguuCGG-CaCCGCCGCCg -3' miRNA: 3'- gCUCUCGaAGCU----GUCaG-GGUGGUGGg -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 3166 | 0.73 | 0.356543 |
Target: 5'- cCGGGAGCacggagCGGgGGUCgaucaucggcgcgCCACCACCCg -3' miRNA: 3'- -GCUCUCGaa----GCUgUCAG-------------GGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 32987 | 0.72 | 0.400482 |
Target: 5'- cCGAGGucaaccGCgUCGAgGGUgagcaccgCCCACCACCCg -3' miRNA: 3'- -GCUCU------CGaAGCUgUCA--------GGGUGGUGGG- -5' |
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18981 | 3' | -55.7 | NC_004684.1 | + | 57350 | 0.71 | 0.456376 |
Target: 5'- --cGAGCUgugcgggcCGACGGUgCCGCCcGCCCa -3' miRNA: 3'- gcuCUCGAa-------GCUGUCAgGGUGG-UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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