miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 3' -55.7 NC_004684.1 + 58163 0.74 0.325299
Target:  5'- gGGGAGCcggugCGACuGUgCCGCCACCa -3'
miRNA:   3'- gCUCUCGaa---GCUGuCAgGGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 37488 0.66 0.778129
Target:  5'- gGAG-GCcUCGu--GUacgaCCCGCCACCCg -3'
miRNA:   3'- gCUCuCGaAGCuguCA----GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 66454 0.66 0.778129
Target:  5'- -cAGGGUggCGGCGuuGUCuccacgCCGCCACCCg -3'
miRNA:   3'- gcUCUCGaaGCUGU--CAG------GGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 13476 0.66 0.768314
Target:  5'- cCGAGgacGGCaaCGGCAacCCCACCGCCg -3'
miRNA:   3'- -GCUC---UCGaaGCUGUcaGGGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 40374 0.66 0.752336
Target:  5'- uGGGGGCcUCGGCGGUggcggCCUucggcaggccggucaGCCACUCg -3'
miRNA:   3'- gCUCUCGaAGCUGUCA-----GGG---------------UGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 59452 0.66 0.748293
Target:  5'- cCGGuGuGCgccggUCGGCGGcgaugUCCACCACCUg -3'
miRNA:   3'- -GCU-CuCGa----AGCUGUCa----GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 38367 0.67 0.727824
Target:  5'- aCGAGGGCgcggUCacCAGUCCCaagaucGCUACCg -3'
miRNA:   3'- -GCUCUCGa---AGcuGUCAGGG------UGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 13721 0.67 0.696465
Target:  5'- cCGAcccaGGCgcugUCGGuCGGUgCCACCACCUc -3'
miRNA:   3'- -GCUc---UCGa---AGCU-GUCAgGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 25651 0.68 0.653871
Target:  5'- uCGAGAGCggCGGCGGUaCCgggcagggCGCgACCUa -3'
miRNA:   3'- -GCUCUCGaaGCUGUCA-GG--------GUGgUGGG- -5'
18981 3' -55.7 NC_004684.1 + 52434 0.69 0.610968
Target:  5'- cCGGGGGUcUCGAU-GUCggCCGCCACCg -3'
miRNA:   3'- -GCUCUCGaAGCUGuCAG--GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 23940 0.7 0.505996
Target:  5'- -cGGAGCUgCG-CGGaCCCGCCugCCg -3'
miRNA:   3'- gcUCUCGAaGCuGUCaGGGUGGugGG- -5'
18981 3' -55.7 NC_004684.1 + 24166 0.7 0.505996
Target:  5'- -cAGGGUccgcaGGCGGUgCCGCCGCCCa -3'
miRNA:   3'- gcUCUCGaag--CUGUCAgGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 44832 0.7 0.52649
Target:  5'- gCGAGcAGCgggUUGGCGGUccaucCCCACUGCUCg -3'
miRNA:   3'- -GCUC-UCGa--AGCUGUCA-----GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 37574 0.7 0.553578
Target:  5'- cCGGGAGCUggaggugcccggcaUCGguaccguGCGGgCCCGgCCGCCCa -3'
miRNA:   3'- -GCUCUCGA--------------AGC-------UGUCaGGGU-GGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 40472 0.7 0.556732
Target:  5'- uCGGGGGUcUCGGCGGUCugcgccgagugcgCCAgCACCUg -3'
miRNA:   3'- -GCUCUCGaAGCUGUCAG-------------GGUgGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 35427 0.69 0.589585
Target:  5'- gCGGGAGg--CGAUGGUCCCGCCGgaCa -3'
miRNA:   3'- -GCUCUCgaaGCUGUCAGGGUGGUggG- -5'
18981 3' -55.7 NC_004684.1 + 22396 0.66 0.787801
Target:  5'- gGGGAGCaUCGGgguuCGG-CaCCGCCGCCg -3'
miRNA:   3'- gCUCUCGaAGCU----GUCaG-GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 3166 0.73 0.356543
Target:  5'- cCGGGAGCacggagCGGgGGUCgaucaucggcgcgCCACCACCCg -3'
miRNA:   3'- -GCUCUCGaa----GCUgUCAG-------------GGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 32987 0.72 0.400482
Target:  5'- cCGAGGucaaccGCgUCGAgGGUgagcaccgCCCACCACCCg -3'
miRNA:   3'- -GCUCU------CGaAGCUgUCA--------GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 57350 0.71 0.456376
Target:  5'- --cGAGCUgugcgggcCGACGGUgCCGCCcGCCCa -3'
miRNA:   3'- gcuCUCGAa-------GCUGUCAgGGUGG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.