miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 3' -55.7 NC_004684.1 + 52295 0.66 0.777154
Target:  5'- gGGGAGaUUCGcaagauugccgauACGGUCCUACUGgCCCg -3'
miRNA:   3'- gCUCUCgAAGC-------------UGUCAGGGUGGU-GGG- -5'
18981 3' -55.7 NC_004684.1 + 46865 0.66 0.778129
Target:  5'- -cGGAcggUCGACGGUUCCugCGCCg -3'
miRNA:   3'- gcUCUcgaAGCUGUCAGGGugGUGGg -5'
18981 3' -55.7 NC_004684.1 + 64965 0.66 0.778129
Target:  5'- cCGGGGGCg-CGACcGgacaacgCgCACCACCCc -3'
miRNA:   3'- -GCUCUCGaaGCUGuCa------GgGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 61486 0.66 0.787801
Target:  5'- ---cGGCgg-GACGGaCCCGCCACCUg -3'
miRNA:   3'- gcucUCGaagCUGUCaGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 40881 0.66 0.787801
Target:  5'- ---cGGCgg-GACGGaCCCGCCACCUg -3'
miRNA:   3'- gcucUCGaagCUGUCaGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 30476 0.66 0.787801
Target:  5'- cCGGGAuGCg-CGugGGgUCCACCACgCCg -3'
miRNA:   3'- -GCUCU-CGaaGCugUCaGGGUGGUG-GG- -5'
18981 3' -55.7 NC_004684.1 + 22396 0.66 0.787801
Target:  5'- gGGGAGCaUCGGgguuCGG-CaCCGCCGCCg -3'
miRNA:   3'- gCUCUCGaAGCU----GUCaG-GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 17241 0.66 0.748293
Target:  5'- uCGAcGGCgaCGACGGUgCCCaACCguuGCCCu -3'
miRNA:   3'- -GCUcUCGaaGCUGUCA-GGG-UGG---UGGG- -5'
18981 3' -55.7 NC_004684.1 + 17977 0.66 0.738109
Target:  5'- aGGGuGGCcUCGAU-GUUCCACCACUUg -3'
miRNA:   3'- gCUC-UCGaAGCUGuCAGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 30616 0.67 0.725756
Target:  5'- -cGGAGCcgUCGGCGGUgaacuucaccgacCCCagcgccaGCCGCCCc -3'
miRNA:   3'- gcUCUCGa-AGCUGUCA-------------GGG-------UGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 3166 0.73 0.356543
Target:  5'- cCGGGAGCacggagCGGgGGUCgaucaucggcgcgCCACCACCCg -3'
miRNA:   3'- -GCUCUCGaa----GCUgUCAG-------------GGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 32987 0.72 0.400482
Target:  5'- cCGAGGucaaccGCgUCGAgGGUgagcaccgCCCACCACCCg -3'
miRNA:   3'- -GCUCU------CGaAGCUgUCA--------GGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 57350 0.71 0.456376
Target:  5'- --cGAGCUgugcgggcCGACGGUgCCGCCcGCCCa -3'
miRNA:   3'- gcuCUCGAa-------GCUGUCAgGGUGG-UGGG- -5'
18981 3' -55.7 NC_004684.1 + 55249 0.71 0.485852
Target:  5'- gGGGuGCUUcCGGCAGcggCuCCACCGCCa -3'
miRNA:   3'- gCUCuCGAA-GCUGUCa--G-GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 40649 0.7 0.523395
Target:  5'- cCGAGGGCUUCGcccagcuCcuggaggucgcggaGGUCgCCACCGCCg -3'
miRNA:   3'- -GCUCUCGAAGCu------G--------------UCAG-GGUGGUGGg -5'
18981 3' -55.7 NC_004684.1 + 53682 0.7 0.557784
Target:  5'- -aAGAGCggCGcACuGUCCgACCGCCUg -3'
miRNA:   3'- gcUCUCGaaGC-UGuCAGGgUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 66500 0.69 0.600263
Target:  5'- ---cGGCgg-GACGGaCCCGCCGCCCg -3'
miRNA:   3'- gcucUCGaagCUGUCaGGGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 19559 0.69 0.600263
Target:  5'- -aGGGGCgcaugUCGcGCGGgccaCCGCCGCCCg -3'
miRNA:   3'- gcUCUCGa----AGC-UGUCag--GGUGGUGGG- -5'
18981 3' -55.7 NC_004684.1 + 28467 0.68 0.675246
Target:  5'- gCGAGAGgaUgGcCAGcUCCCAggaCACCCg -3'
miRNA:   3'- -GCUCUCgaAgCuGUC-AGGGUg--GUGGG- -5'
18981 3' -55.7 NC_004684.1 + 61406 0.67 0.68588
Target:  5'- cCGAGGGCggcggcccggCGGCGGUgCUGCCggaaaucgACCCg -3'
miRNA:   3'- -GCUCUCGaa--------GCUGUCAgGGUGG--------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.