Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 13721 | 0.67 | 0.696465 |
Target: 5'- cCGAcccaGGCgcugUCGGuCGGUgCCACCACCUc -3' miRNA: 3'- -GCUc---UCGa---AGCU-GUCAgGGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 61406 | 0.67 | 0.68588 |
Target: 5'- cCGAGGGCggcggcccggCGGCGGUgCUGCCggaaaucgACCCg -3' miRNA: 3'- -GCUCUCGaa--------GCUGUCAgGGUGG--------UGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 28467 | 0.68 | 0.675246 |
Target: 5'- gCGAGAGgaUgGcCAGcUCCCAggaCACCCg -3' miRNA: 3'- -GCUCUCgaAgCuGUC-AGGGUg--GUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 25651 | 0.68 | 0.653871 |
Target: 5'- uCGAGAGCggCGGCGGUaCCgggcagggCGCgACCUa -3' miRNA: 3'- -GCUCUCGaaGCUGUCA-GG--------GUGgUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 52434 | 0.69 | 0.610968 |
Target: 5'- cCGGGGGUcUCGAU-GUCggCCGCCACCg -3' miRNA: 3'- -GCUCUCGaAGCUGuCAG--GGUGGUGGg -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 66500 | 0.69 | 0.600263 |
Target: 5'- ---cGGCgg-GACGGaCCCGCCGCCCg -3' miRNA: 3'- gcucUCGaagCUGUCaGGGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 19559 | 0.69 | 0.600263 |
Target: 5'- -aGGGGCgcaugUCGcGCGGgccaCCGCCGCCCg -3' miRNA: 3'- gcUCUCGa----AGC-UGUCag--GGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 35427 | 0.69 | 0.589585 |
Target: 5'- gCGGGAGg--CGAUGGUCCCGCCGgaCa -3' miRNA: 3'- -GCUCUCgaaGCUGUCAGGGUGGUggG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 53682 | 0.7 | 0.557784 |
Target: 5'- -aAGAGCggCGcACuGUCCgACCGCCUg -3' miRNA: 3'- gcUCUCGaaGC-UGuCAGGgUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 40472 | 0.7 | 0.556732 |
Target: 5'- uCGGGGGUcUCGGCGGUCugcgccgagugcgCCAgCACCUg -3' miRNA: 3'- -GCUCUCGaAGCUGUCAG-------------GGUgGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 37574 | 0.7 | 0.553578 |
Target: 5'- cCGGGAGCUggaggugcccggcaUCGguaccguGCGGgCCCGgCCGCCCa -3' miRNA: 3'- -GCUCUCGA--------------AGC-------UGUCaGGGU-GGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 44832 | 0.7 | 0.52649 |
Target: 5'- gCGAGcAGCgggUUGGCGGUccaucCCCACUGCUCg -3' miRNA: 3'- -GCUC-UCGa--AGCUGUCA-----GGGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 40649 | 0.7 | 0.523395 |
Target: 5'- cCGAGGGCUUCGcccagcuCcuggaggucgcggaGGUCgCCACCGCCg -3' miRNA: 3'- -GCUCUCGAAGCu------G--------------UCAG-GGUGGUGGg -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 24166 | 0.7 | 0.505996 |
Target: 5'- -cAGGGUccgcaGGCGGUgCCGCCGCCCa -3' miRNA: 3'- gcUCUCGaag--CUGUCAgGGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 23940 | 0.7 | 0.505996 |
Target: 5'- -cGGAGCUgCG-CGGaCCCGCCugCCg -3' miRNA: 3'- gcUCUCGAaGCuGUCaGGGUGGugGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 55249 | 0.71 | 0.485852 |
Target: 5'- gGGGuGCUUcCGGCAGcggCuCCACCGCCa -3' miRNA: 3'- gCUCuCGAA-GCUGUCa--G-GGUGGUGGg -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 57350 | 0.71 | 0.456376 |
Target: 5'- --cGAGCUgugcgggcCGACGGUgCCGCCcGCCCa -3' miRNA: 3'- gcuCUCGAa-------GCUGUCAgGGUGG-UGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 32987 | 0.72 | 0.400482 |
Target: 5'- cCGAGGucaaccGCgUCGAgGGUgagcaccgCCCACCACCCg -3' miRNA: 3'- -GCUCU------CGaAGCUgUCA--------GGGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 3166 | 0.73 | 0.356543 |
Target: 5'- cCGGGAGCacggagCGGgGGUCgaucaucggcgcgCCACCACCCg -3' miRNA: 3'- -GCUCUCGaa----GCUgUCAG-------------GGUGGUGGG- -5' |
|||||||
18981 | 3' | -55.7 | NC_004684.1 | + | 58163 | 0.74 | 0.325299 |
Target: 5'- gGGGAGCcggugCGACuGUgCCGCCACCa -3' miRNA: 3'- gCUCUCGaa---GCUGuCAgGGUGGUGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home