miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 63053 0.66 0.316897
Target:  5'- aCCGCCuaACgGUUGGUggcggcuaccgUGCCGCCGUg- -3'
miRNA:   3'- -GGCGGcgUG-CGACCG-----------GCGGCGGCAgc -5'
18982 3' -65 NC_004684.1 + 33791 0.66 0.316897
Target:  5'- aCCGCCGCugcCGCUGGCgaggguguccagCGCgGUgGUgGu -3'
miRNA:   3'- -GGCGGCGu--GCGACCG------------GCGgCGgCAgC- -5'
18982 3' -65 NC_004684.1 + 58712 0.66 0.316897
Target:  5'- gCGCgGCACca--GCCGCCacggGCCGUCGa -3'
miRNA:   3'- gGCGgCGUGcgacCGGCGG----CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 50472 0.66 0.316897
Target:  5'- cCCGCCGaCAUGCgcaccgagcgGGUgaagaaCGCCGCCGa-- -3'
miRNA:   3'- -GGCGGC-GUGCGa---------CCG------GCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 49424 0.66 0.316897
Target:  5'- cCCGUCaGCGcCGaccaUGGCCGCCGacggGUCGa -3'
miRNA:   3'- -GGCGG-CGU-GCg---ACCGGCGGCgg--CAGC- -5'
18982 3' -65 NC_004684.1 + 38945 0.66 0.316897
Target:  5'- aCCGCgCGUaaucgguguugaGCGCcagGGCCaCCagGCCGUCGg -3'
miRNA:   3'- -GGCG-GCG------------UGCGa--CCGGcGG--CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 47750 0.67 0.312645
Target:  5'- gUGuuGCGCGUUGGCCGgacgCGCCcccgguagugcgucaGUCGg -3'
miRNA:   3'- gGCggCGUGCGACCGGCg---GCGG---------------CAGC- -5'
18982 3' -65 NC_004684.1 + 12175 0.67 0.309834
Target:  5'- gCCGCCGCGCG--GGCCaGCaCcUCGUCGc -3'
miRNA:   3'- -GGCGGCGUGCgaCCGG-CG-GcGGCAGC- -5'
18982 3' -65 NC_004684.1 + 25970 0.67 0.309834
Target:  5'- aCCGCUG-ACGUucugcccggccUGGCCGagGCCGUUGa -3'
miRNA:   3'- -GGCGGCgUGCG-----------ACCGGCggCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 25005 0.67 0.309834
Target:  5'- gCCGCCcaGCGCGCUgaucgcGGCgGCgGCCaUCu -3'
miRNA:   3'- -GGCGG--CGUGCGA------CCGgCGgCGGcAGc -5'
18982 3' -65 NC_004684.1 + 21149 0.67 0.309834
Target:  5'- aCCG-CGCACGCgaaauacGCCGCaGCUGUCc -3'
miRNA:   3'- -GGCgGCGUGCGac-----CGGCGgCGGCAGc -5'
18982 3' -65 NC_004684.1 + 36068 0.67 0.309834
Target:  5'- cCCGaCUGUGCGCcaGGCCugcguggaGUCGCUGUCGu -3'
miRNA:   3'- -GGC-GGCGUGCGa-CCGG--------CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 60954 0.67 0.309834
Target:  5'- gCGCauCGCGCUcccGGCCgacaucGCCGCCGUgGa -3'
miRNA:   3'- gGCGgcGUGCGA---CCGG------CGGCGGCAgC- -5'
18982 3' -65 NC_004684.1 + 2003 0.67 0.309834
Target:  5'- -gGCCuGgGCGCUGGaCCGCC-CCGaCGu -3'
miRNA:   3'- ggCGG-CgUGCGACC-GGCGGcGGCaGC- -5'
18982 3' -65 NC_004684.1 + 27940 0.67 0.309834
Target:  5'- aCCGCCGgA-GCUGGCaccgugguaCGUCGCCGa-- -3'
miRNA:   3'- -GGCGGCgUgCGACCG---------GCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 40201 0.67 0.307738
Target:  5'- gCCGCCaGCGCccGCUacggccacgagaucGGCCGCUGCgGUa- -3'
miRNA:   3'- -GGCGG-CGUG--CGA--------------CCGGCGGCGgCAgc -5'
18982 3' -65 NC_004684.1 + 23592 0.67 0.307738
Target:  5'- aCGCCGgACaGCgucuuccaGGCCGgaaagcggucaccaCCGCCGUCa -3'
miRNA:   3'- gGCGGCgUG-CGa-------CCGGC--------------GGCGGCAGc -5'
18982 3' -65 NC_004684.1 + 30141 0.67 0.302891
Target:  5'- aCCGCgcagugUGCGCGUcGGCCaGUgggcgaucaaCGCCGUCGg -3'
miRNA:   3'- -GGCG------GCGUGCGaCCGG-CG----------GCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 28888 0.67 0.302891
Target:  5'- aCCGaaCgGCGCGCcgUGGCgacCGCCGCUGaUCGa -3'
miRNA:   3'- -GGC--GgCGUGCG--ACCG---GCGGCGGC-AGC- -5'
18982 3' -65 NC_004684.1 + 19137 0.67 0.302891
Target:  5'- cCUGCCGCACuucaugaccuGCccGGCCGCCGgUGcCa -3'
miRNA:   3'- -GGCGGCGUG----------CGa-CCGGCGGCgGCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.