miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 22135 0.66 0.33881
Target:  5'- gUGCCugGCGCUGGCUGuuCCGCaUGUCGc -3'
miRNA:   3'- gGCGGcgUGCGACCGGC--GGCG-GCAGC- -5'
18982 3' -65 NC_004684.1 + 63527 0.66 0.33657
Target:  5'- gCGUCGCagcucgcgggcgugGCGCUcggccuccucGGCCGCUGCCaUCa -3'
miRNA:   3'- gGCGGCG--------------UGCGA----------CCGGCGGCGGcAGc -5'
18982 3' -65 NC_004684.1 + 34112 0.66 0.331385
Target:  5'- gCGCagacuGCACGCgUGGCggucacguuccuCGCCGCC-UCGg -3'
miRNA:   3'- gGCGg----CGUGCG-ACCG------------GCGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 66952 0.66 0.331385
Target:  5'- gCGCUGaCGUGCUGGCCaGC-GCgGUCGa -3'
miRNA:   3'- gGCGGC-GUGCGACCGG-CGgCGgCAGC- -5'
18982 3' -65 NC_004684.1 + 6122 0.66 0.331385
Target:  5'- -gGCCGCgagGCGCUGGCgGCCuaaagGCCa--- -3'
miRNA:   3'- ggCGGCG---UGCGACCGgCGG-----CGGcagc -5'
18982 3' -65 NC_004684.1 + 57885 0.66 0.331385
Target:  5'- aCCGgUGCugGCUGGUgGCCgggcugaaggugGCCGg-- -3'
miRNA:   3'- -GGCgGCGugCGACCGgCGG------------CGGCagc -5'
18982 3' -65 NC_004684.1 + 28211 0.66 0.331385
Target:  5'- aCCGCCaGCcuGCGCuaccUGGCCGCCcacCCGgagCa -3'
miRNA:   3'- -GGCGG-CG--UGCG----ACCGGCGGc--GGCa--Gc -5'
18982 3' -65 NC_004684.1 + 6529 0.66 0.331385
Target:  5'- gCGCCucggccaaGCGCGaaGGCguucaCGCCGCCGcCGa -3'
miRNA:   3'- gGCGG--------CGUGCgaCCG-----GCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 39867 0.66 0.331385
Target:  5'- gCGCUugGCGCGCaucaGCuCGCCcagGCCGUCGg -3'
miRNA:   3'- gGCGG--CGUGCGac--CG-GCGG---CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 8829 0.66 0.326988
Target:  5'- cUCGCCGgGCGCggcGGCgaacaucgggaucagCGCCGCCauggaguccucGUCGu -3'
miRNA:   3'- -GGCGGCgUGCGa--CCG---------------GCGGCGG-----------CAGC- -5'
18982 3' -65 NC_004684.1 + 44511 0.66 0.324081
Target:  5'- gUGUCGUccaGCGUcuUGGCCGCCGUgGUgGc -3'
miRNA:   3'- gGCGGCG---UGCG--ACCGGCGGCGgCAgC- -5'
18982 3' -65 NC_004684.1 + 59548 0.66 0.324081
Target:  5'- aCCGCCaGCGCGC--GCCGuuGUCG-Ca -3'
miRNA:   3'- -GGCGG-CGUGCGacCGGCggCGGCaGc -5'
18982 3' -65 NC_004684.1 + 47730 0.66 0.324081
Target:  5'- aCGCCGCAC--UGGCCGUCcacgacaagGCCGaCGc -3'
miRNA:   3'- gGCGGCGUGcgACCGGCGG---------CGGCaGC- -5'
18982 3' -65 NC_004684.1 + 39531 0.66 0.324081
Target:  5'- aCCGCCGUGCGUgcaGGCCuaauccUCGCCGg-- -3'
miRNA:   3'- -GGCGGCGUGCGa--CCGGc-----GGCGGCagc -5'
18982 3' -65 NC_004684.1 + 64697 0.66 0.324081
Target:  5'- gUCGa-GCAUGUUGGCgGCCGCCa--- -3'
miRNA:   3'- -GGCggCGUGCGACCGgCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 48284 0.66 0.324081
Target:  5'- uCCGaacaGCuuGCUGaGCCGCUGCCGcUGa -3'
miRNA:   3'- -GGCgg--CGugCGAC-CGGCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 565 0.66 0.324081
Target:  5'- gCUGCCGaccuCGCUGGCC-CgGuuGUCc -3'
miRNA:   3'- -GGCGGCgu--GCGACCGGcGgCggCAGc -5'
18982 3' -65 NC_004684.1 + 16814 0.66 0.321193
Target:  5'- gCGCCauuCGCGCcagguucaaagcgGGUCGCCGCCGcUCu -3'
miRNA:   3'- gGCGGc--GUGCGa------------CCGGCGGCGGC-AGc -5'
18982 3' -65 NC_004684.1 + 33791 0.66 0.316897
Target:  5'- aCCGCCGCugcCGCUGGCgaggguguccagCGCgGUgGUgGu -3'
miRNA:   3'- -GGCGGCGu--GCGACCG------------GCGgCGgCAgC- -5'
18982 3' -65 NC_004684.1 + 50472 0.66 0.316897
Target:  5'- cCCGCCGaCAUGCgcaccgagcgGGUgaagaaCGCCGCCGa-- -3'
miRNA:   3'- -GGCGGC-GUGCGa---------CCG------GCGGCGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.