miRNA display CGI


Results 21 - 40 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 56028 0.75 0.083291
Target:  5'- aCGCUGCugGCcaccaccgugGGCCuggagGCCGCCGUCa -3'
miRNA:   3'- gGCGGCGugCGa---------CCGG-----CGGCGGCAGc -5'
18982 3' -65 NC_004684.1 + 20413 0.75 0.083291
Target:  5'- aCGCCGaucuCGaUGGCCGCCGCCGcCa -3'
miRNA:   3'- gGCGGCgu--GCgACCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 44365 0.75 0.083291
Target:  5'- aCGCCguGCACGagUGGUgUGCCGCCGUCGa -3'
miRNA:   3'- gGCGG--CGUGCg-ACCG-GCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 26659 0.74 0.087765
Target:  5'- aCCGCCGCGCGCcagGGCgCGCCGgaaCG-CGu -3'
miRNA:   3'- -GGCGGCGUGCGa--CCG-GCGGCg--GCaGC- -5'
18982 3' -65 NC_004684.1 + 66610 0.74 0.091031
Target:  5'- cCCGCCGggcCGCGCUgaaggcggcccgcgaGGCCGCCGCCa--- -3'
miRNA:   3'- -GGCGGC---GUGCGA---------------CCGGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 23791 0.74 0.094167
Target:  5'- gCCGCCGCccagguuggaggccACGCUcugguccgGGCCGaCCagGCCGUCGg -3'
miRNA:   3'- -GGCGGCG--------------UGCGA--------CCGGC-GG--CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 58606 0.74 0.097406
Target:  5'- gCCGCCaacgGCACGCUGGaCCGCaGUCGgcgCGg -3'
miRNA:   3'- -GGCGG----CGUGCGACC-GGCGgCGGCa--GC- -5'
18982 3' -65 NC_004684.1 + 46681 0.74 0.099968
Target:  5'- aCCGCCGC-CGU----CGCCGCCGUCGa -3'
miRNA:   3'- -GGCGGCGuGCGaccgGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 65768 0.74 0.102594
Target:  5'- gCCGCCGCGCGCcggUGGgCGCgCGCaCGgCGa -3'
miRNA:   3'- -GGCGGCGUGCG---ACCgGCG-GCG-GCaGC- -5'
18982 3' -65 NC_004684.1 + 56257 0.73 0.105285
Target:  5'- gCGCCGC-CGUc-GUCGCCGUCGUCGg -3'
miRNA:   3'- gGCGGCGuGCGacCGGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 41776 0.73 0.105285
Target:  5'- gCCGUCGcCGCGCUGGgUGuuGCCGaggUCGg -3'
miRNA:   3'- -GGCGGC-GUGCGACCgGCggCGGC---AGC- -5'
18982 3' -65 NC_004684.1 + 47273 0.73 0.108041
Target:  5'- uUCGCCGCGCaGCggcggcccUGGCCGCCGCUa--- -3'
miRNA:   3'- -GGCGGCGUG-CG--------ACCGGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 27277 0.73 0.108041
Target:  5'- aCCGCCGCcaaagauCGCcgUGGCCaggucGCCGCCGUa- -3'
miRNA:   3'- -GGCGGCGu------GCG--ACCGG-----CGGCGGCAgc -5'
18982 3' -65 NC_004684.1 + 25928 0.73 0.11976
Target:  5'- gCCGCCgaGCAU-CUGGCCGCCgauGCCGUUc -3'
miRNA:   3'- -GGCGG--CGUGcGACCGGCGG---CGGCAGc -5'
18982 3' -65 NC_004684.1 + 7501 0.73 0.11976
Target:  5'- uUGUCuaCGCGCUGGCCGCCGCgCG-CGu -3'
miRNA:   3'- gGCGGc-GUGCGACCGGCGGCG-GCaGC- -5'
18982 3' -65 NC_004684.1 + 34923 0.73 0.11976
Target:  5'- aCgGCUGCAUGCgcagcaGaCCGCCGUCGUCGg -3'
miRNA:   3'- -GgCGGCGUGCGac----C-GGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 10325 0.73 0.11976
Target:  5'- gCGCCGCaACGCaGGCCGCCaucgaccccGCCGg-- -3'
miRNA:   3'- gGCGGCG-UGCGaCCGGCGG---------CGGCagc -5'
18982 3' -65 NC_004684.1 + 27109 0.73 0.11976
Target:  5'- aCCGaCUuuGCGCUGGCCGuuGCCGg-- -3'
miRNA:   3'- -GGC-GGcgUGCGACCGGCggCGGCagc -5'
18982 3' -65 NC_004684.1 + 22977 0.72 0.122555
Target:  5'- aCGCCGCcaucgaacCGCUgaucaacggccugGGCCgacugGCCGCCGUCGg -3'
miRNA:   3'- gGCGGCGu-------GCGA-------------CCGG-----CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 18353 0.72 0.122869
Target:  5'- gCgGCCGgGCGU--GCCGuuGCCGUCGa -3'
miRNA:   3'- -GgCGGCgUGCGacCGGCggCGGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.