Results 21 - 40 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18982 | 3' | -65 | NC_004684.1 | + | 66952 | 0.66 | 0.331385 |
Target: 5'- gCGCUGaCGUGCUGGCCaGC-GCgGUCGa -3' miRNA: 3'- gGCGGC-GUGCGACCGG-CGgCGgCAGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 6122 | 0.66 | 0.331385 |
Target: 5'- -gGCCGCgagGCGCUGGCgGCCuaaagGCCa--- -3' miRNA: 3'- ggCGGCG---UGCGACCGgCGG-----CGGcagc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 65448 | 0.66 | 0.33881 |
Target: 5'- aCCGUCGCccUGgUGGCCcuggggGCCGCCaUCGu -3' miRNA: 3'- -GGCGGCGu-GCgACCGG------CGGCGGcAGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 42506 | 0.66 | 0.345595 |
Target: 5'- -gGCCaacgcgaucaacgGCGCGCUcaCCGCCGUgGUCGg -3' miRNA: 3'- ggCGG-------------CGUGCGAccGGCGGCGgCAGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 57885 | 0.66 | 0.331385 |
Target: 5'- aCCGgUGCugGCUGGUgGCCgggcugaaggugGCCGg-- -3' miRNA: 3'- -GGCgGCGugCGACCGgCGG------------CGGCagc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 26568 | 0.66 | 0.346355 |
Target: 5'- uCCGgCGCGCcCUGGCgCGCgGCgGUg- -3' miRNA: 3'- -GGCgGCGUGcGACCG-GCGgCGgCAgc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 26457 | 0.66 | 0.346355 |
Target: 5'- aCgGCgGCACGcCUGGCCGCgacagcgugccCGCCa--- -3' miRNA: 3'- -GgCGgCGUGC-GACCGGCG-----------GCGGcagc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 28211 | 0.66 | 0.331385 |
Target: 5'- aCCGCCaGCcuGCGCuaccUGGCCGCCcacCCGgagCa -3' miRNA: 3'- -GGCGG-CG--UGCG----ACCGGCGGc--GGCa--Gc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 24492 | 0.66 | 0.346355 |
Target: 5'- aCCGCCGgGgGCgGuGCCGCaggGCCGcgCGu -3' miRNA: 3'- -GGCGGCgUgCGaC-CGGCGg--CGGCa-GC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 63527 | 0.66 | 0.33657 |
Target: 5'- gCGUCGCagcucgcgggcgugGCGCUcggccuccucGGCCGCUGCCaUCa -3' miRNA: 3'- gGCGGCG--------------UGCGA----------CCGGCGGCGGcAGc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 34720 | 0.66 | 0.354019 |
Target: 5'- uCCGauCCGguCGuCUGGCaCGUCGUCGUgGa -3' miRNA: 3'- -GGC--GGCguGC-GACCG-GCGGCGGCAgC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 19623 | 0.66 | 0.361019 |
Target: 5'- cCCGgCGCACccgcaGCUGGCguugaGCCagugcguGCCGUCc -3' miRNA: 3'- -GGCgGCGUG-----CGACCGg----CGG-------CGGCAGc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 6529 | 0.66 | 0.331385 |
Target: 5'- gCGCCucggccaaGCGCGaaGGCguucaCGCCGCCGcCGa -3' miRNA: 3'- gGCGG--------CGUGCgaCCG-----GCGGCGGCaGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 28576 | 0.66 | 0.354019 |
Target: 5'- aCCGgUGUGCgGC-GGCUGCCuGCCgGUCGg -3' miRNA: 3'- -GGCgGCGUG-CGaCCGGCGG-CGG-CAGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 49090 | 0.66 | 0.346355 |
Target: 5'- gCCGCCaaccgGCAgGUgccacaGGUCGCCGUcggCGUCGg -3' miRNA: 3'- -GGCGG-----CGUgCGa-----CCGGCGGCG---GCAGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 36887 | 0.66 | 0.346355 |
Target: 5'- gUGUCGUA-GCUGaccgaGCCGCCGCCGa-- -3' miRNA: 3'- gGCGGCGUgCGAC-----CGGCGGCGGCagc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 38147 | 0.66 | 0.354019 |
Target: 5'- aCGCauuCGCGCGCaUGGUCGCCGgacgauaacaCCG-CGa -3' miRNA: 3'- gGCG---GCGUGCG-ACCGGCGGC----------GGCaGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 19688 | 0.66 | 0.346355 |
Target: 5'- aCCGCCaGCAC-CUcGGCCGCCGgaCUGg-- -3' miRNA: 3'- -GGCGG-CGUGcGA-CCGGCGGC--GGCagc -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 47591 | 0.66 | 0.354019 |
Target: 5'- gUGCUcgGCgAUGUaGGCCGCacacCGCCGUCGg -3' miRNA: 3'- gGCGG--CG-UGCGaCCGGCG----GCGGCAGC- -5' |
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18982 | 3' | -65 | NC_004684.1 | + | 49424 | 0.66 | 0.316897 |
Target: 5'- cCCGUCaGCGcCGaccaUGGCCGCCGacggGUCGa -3' miRNA: 3'- -GGCGG-CGU-GCg---ACCGGCGGCgg--CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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