miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 39867 0.66 0.331385
Target:  5'- gCGCUugGCGCGCaucaGCuCGCCcagGCCGUCGg -3'
miRNA:   3'- gGCGG--CGUGCGac--CG-GCGG---CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 26568 0.66 0.346355
Target:  5'- uCCGgCGCGCcCUGGCgCGCgGCgGUg- -3'
miRNA:   3'- -GGCgGCGUGcGACCG-GCGgCGgCAgc -5'
18982 3' -65 NC_004684.1 + 39531 0.66 0.324081
Target:  5'- aCCGCCGUGCGUgcaGGCCuaauccUCGCCGg-- -3'
miRNA:   3'- -GGCGGCGUGCGa--CCGGc-----GGCGGCagc -5'
18982 3' -65 NC_004684.1 + 38147 0.66 0.354019
Target:  5'- aCGCauuCGCGCGCaUGGUCGCCGgacgauaacaCCG-CGa -3'
miRNA:   3'- gGCG---GCGUGCG-ACCGGCGGC----------GGCaGC- -5'
18982 3' -65 NC_004684.1 + 16814 0.66 0.321193
Target:  5'- gCGCCauuCGCGCcagguucaaagcgGGUCGCCGCCGcUCu -3'
miRNA:   3'- gGCGGc--GUGCGa------------CCGGCGGCGGC-AGc -5'
18982 3' -65 NC_004684.1 + 36781 0.66 0.316897
Target:  5'- gUGCCG-ACGCUGGUCGgCGgCGgcUCGg -3'
miRNA:   3'- gGCGGCgUGCGACCGGCgGCgGC--AGC- -5'
18982 3' -65 NC_004684.1 + 48783 0.66 0.341814
Target:  5'- aCGCCGgGCG--GGCCgaugaugcaggacagGCCGCCGUUc -3'
miRNA:   3'- gGCGGCgUGCgaCCGG---------------CGGCGGCAGc -5'
18982 3' -65 NC_004684.1 + 24492 0.66 0.346355
Target:  5'- aCCGCCGgGgGCgGuGCCGCaggGCCGcgCGu -3'
miRNA:   3'- -GGCGGCgUgCGaC-CGGCGg--CGGCa-GC- -5'
18982 3' -65 NC_004684.1 + 57885 0.66 0.331385
Target:  5'- aCCGgUGCugGCUGGUgGCCgggcugaaggugGCCGg-- -3'
miRNA:   3'- -GGCgGCGugCGACCGgCGG------------CGGCagc -5'
18982 3' -65 NC_004684.1 + 34112 0.66 0.331385
Target:  5'- gCGCagacuGCACGCgUGGCggucacguuccuCGCCGCC-UCGg -3'
miRNA:   3'- gGCGg----CGUGCG-ACCG------------GCGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 63053 0.66 0.316897
Target:  5'- aCCGCCuaACgGUUGGUggcggcuaccgUGCCGCCGUg- -3'
miRNA:   3'- -GGCGGcgUG-CGACCG-----------GCGGCGGCAgc -5'
18982 3' -65 NC_004684.1 + 34720 0.66 0.354019
Target:  5'- uCCGauCCGguCGuCUGGCaCGUCGUCGUgGa -3'
miRNA:   3'- -GGC--GGCguGC-GACCG-GCGGCGGCAgC- -5'
18982 3' -65 NC_004684.1 + 42506 0.66 0.345595
Target:  5'- -gGCCaacgcgaucaacgGCGCGCUcaCCGCCGUgGUCGg -3'
miRNA:   3'- ggCGG-------------CGUGCGAccGGCGGCGgCAGC- -5'
18982 3' -65 NC_004684.1 + 44511 0.66 0.324081
Target:  5'- gUGUCGUccaGCGUcuUGGCCGCCGUgGUgGc -3'
miRNA:   3'- gGCGGCG---UGCG--ACCGGCGGCGgCAgC- -5'
18982 3' -65 NC_004684.1 + 19623 0.66 0.361019
Target:  5'- cCCGgCGCACccgcaGCUGGCguugaGCCagugcguGCCGUCc -3'
miRNA:   3'- -GGCgGCGUG-----CGACCGg----CGG-------CGGCAGc -5'
18982 3' -65 NC_004684.1 + 26457 0.66 0.346355
Target:  5'- aCgGCgGCACGcCUGGCCGCgacagcgugccCGCCa--- -3'
miRNA:   3'- -GgCGgCGUGC-GACCGGCG-----------GCGGcagc -5'
18982 3' -65 NC_004684.1 + 59548 0.66 0.324081
Target:  5'- aCCGCCaGCGCGC--GCCGuuGUCG-Ca -3'
miRNA:   3'- -GGCGG-CGUGCGacCGGCggCGGCaGc -5'
18982 3' -65 NC_004684.1 + 63527 0.66 0.33657
Target:  5'- gCGUCGCagcucgcgggcgugGCGCUcggccuccucGGCCGCUGCCaUCa -3'
miRNA:   3'- gGCGGCG--------------UGCGA----------CCGGCGGCGGcAGc -5'
18982 3' -65 NC_004684.1 + 64697 0.66 0.324081
Target:  5'- gUCGa-GCAUGUUGGCgGCCGCCa--- -3'
miRNA:   3'- -GGCggCGUGCGACCGgCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 49090 0.66 0.346355
Target:  5'- gCCGCCaaccgGCAgGUgccacaGGUCGCCGUcggCGUCGg -3'
miRNA:   3'- -GGCGG-----CGUgCGa-----CCGGCGGCG---GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.