miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 32958 0.71 0.150561
Target:  5'- gCGCU-CGCGCUGGCCaaccucGCCGCC-UCGa -3'
miRNA:   3'- gGCGGcGUGCGACCGG------CGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 27109 0.73 0.11976
Target:  5'- aCCGaCUuuGCGCUGGCCGuuGCCGg-- -3'
miRNA:   3'- -GGC-GGcgUGCGACCGGCggCGGCagc -5'
18982 3' -65 NC_004684.1 + 22977 0.72 0.122555
Target:  5'- aCGCCGCcaucgaacCGCUgaucaacggccugGGCCgacugGCCGCCGUCGg -3'
miRNA:   3'- gGCGGCGu-------GCGA-------------CCGG-----CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 4502 0.72 0.126053
Target:  5'- cCCGCCGa--GCUGGCgGCCaCCGUgGa -3'
miRNA:   3'- -GGCGGCgugCGACCGgCGGcGGCAgC- -5'
18982 3' -65 NC_004684.1 + 15079 0.72 0.144603
Target:  5'- aCgGCCuuaucgGCGCGgUGGCCGCCcuggaggccgaccuuGCCGUCa -3'
miRNA:   3'- -GgCGG------CGUGCgACCGGCGG---------------CGGCAGc -5'
18982 3' -65 NC_004684.1 + 3680 0.71 0.146441
Target:  5'- cCUGuuGgCACGCUGGCaggagaucgccagCGCCGCCG-CGc -3'
miRNA:   3'- -GGCggC-GUGCGACCG-------------GCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 42216 0.71 0.146812
Target:  5'- -gGCCG-ACG-UGGCCGCCGgUGUCGg -3'
miRNA:   3'- ggCGGCgUGCgACCGGCGGCgGCAGC- -5'
18982 3' -65 NC_004684.1 + 10157 0.71 0.146812
Target:  5'- gCCaGCCGC-CGCUGGCCaCCGCgcUCGa -3'
miRNA:   3'- -GG-CGGCGuGCGACCGGcGGCGgcAGC- -5'
18982 3' -65 NC_004684.1 + 50191 0.71 0.146812
Target:  5'- -gGCCGCACGaCguuGCCGUCGgCGUCGu -3'
miRNA:   3'- ggCGGCGUGC-Gac-CGGCGGCgGCAGC- -5'
18982 3' -65 NC_004684.1 + 10325 0.73 0.11976
Target:  5'- gCGCCGCaACGCaGGCCGCCaucgaccccGCCGg-- -3'
miRNA:   3'- gGCGGCG-UGCGaCCGGCGG---------CGGCagc -5'
18982 3' -65 NC_004684.1 + 7501 0.73 0.11976
Target:  5'- uUGUCuaCGCGCUGGCCGCCGCgCG-CGu -3'
miRNA:   3'- gGCGGc-GUGCGACCGGCGGCG-GCaGC- -5'
18982 3' -65 NC_004684.1 + 65768 0.74 0.102594
Target:  5'- gCCGCCGCGCGCcggUGGgCGCgCGCaCGgCGa -3'
miRNA:   3'- -GGCGGCGUGCG---ACCgGCG-GCG-GCaGC- -5'
18982 3' -65 NC_004684.1 + 15148 0.83 0.018613
Target:  5'- aCGCCaGCGCGCagcUGGCCGCCGCCGcCa -3'
miRNA:   3'- gGCGG-CGUGCG---ACCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 37630 0.78 0.046517
Target:  5'- aCGCCGUcgguGCGCUGGCCaugGCCGCCcgGUCa -3'
miRNA:   3'- gGCGGCG----UGCGACCGG---CGGCGG--CAGc -5'
18982 3' -65 NC_004684.1 + 61315 0.78 0.047776
Target:  5'- aCCGCCGC-CG--GGCCGCCGCCcUCGg -3'
miRNA:   3'- -GGCGGCGuGCgaCCGGCGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 12882 0.78 0.051344
Target:  5'- gCCGCCGCcggggagccuGCGCUcGCCGCCagcggugccggugcGCCGUCGg -3'
miRNA:   3'- -GGCGGCG----------UGCGAcCGGCGG--------------CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 26408 0.77 0.053153
Target:  5'- gCCGCCaccgGCGCGCUGGCagcgggguuCGCCGCCGg-- -3'
miRNA:   3'- -GGCGG----CGUGCGACCG---------GCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 9851 0.77 0.060704
Target:  5'- aCCGCCGC-CGgUGaGCUGCCGCCGg-- -3'
miRNA:   3'- -GGCGGCGuGCgAC-CGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 24893 0.75 0.081137
Target:  5'- aUCGUgGCuACGagaUGGCCGCCGCCG-CGa -3'
miRNA:   3'- -GGCGgCG-UGCg--ACCGGCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 56028 0.75 0.083291
Target:  5'- aCGCUGCugGCcaccaccgugGGCCuggagGCCGCCGUCa -3'
miRNA:   3'- gGCGGCGugCGa---------CCGG-----CGGCGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.