miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 6250 1.1 0.00017
Target:  5'- aCCGCCGCACGCUGGCCGCCGCCGUCGa -3'
miRNA:   3'- -GGCGGCGUGCGACCGGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 58606 0.74 0.097406
Target:  5'- gCCGCCaacgGCACGCUGGaCCGCaGUCGgcgCGg -3'
miRNA:   3'- -GGCGG----CGUGCGACC-GGCGgCGGCa--GC- -5'
18982 3' -65 NC_004684.1 + 41776 0.73 0.105285
Target:  5'- gCCGUCGcCGCGCUGGgUGuuGCCGaggUCGg -3'
miRNA:   3'- -GGCGGC-GUGCGACCgGCggCGGC---AGC- -5'
18982 3' -65 NC_004684.1 + 19623 0.66 0.361019
Target:  5'- cCCGgCGCACccgcaGCUGGCguugaGCCagugcguGCCGUCc -3'
miRNA:   3'- -GGCgGCGUG-----CGACCGg----CGG-------CGGCAGc -5'
18982 3' -65 NC_004684.1 + 63023 0.78 0.046517
Target:  5'- gCGCCGCGCGCUGGUCGgCuUCGUCa -3'
miRNA:   3'- gGCGGCGUGCGACCGGCgGcGGCAGc -5'
18982 3' -65 NC_004684.1 + 22452 0.78 0.050395
Target:  5'- aCCGCCaGCGCGaccGCCGCCGCCGcCGc -3'
miRNA:   3'- -GGCGG-CGUGCgacCGGCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 49270 0.77 0.056057
Target:  5'- gCCGCCGC-CGCc-GCCGCCGCCGa-- -3'
miRNA:   3'- -GGCGGCGuGCGacCGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 33590 0.77 0.059115
Target:  5'- aCCGCC-CGCGaguacagGGCCGCCGCCG-CGu -3'
miRNA:   3'- -GGCGGcGUGCga-----CCGGCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 29313 0.75 0.076987
Target:  5'- gCGCCacaGCAUGUccUGGCCGuuGCCGUCc -3'
miRNA:   3'- gGCGG---CGUGCG--ACCGGCggCGGCAGc -5'
18982 3' -65 NC_004684.1 + 23791 0.74 0.094167
Target:  5'- gCCGCCGCccagguuggaggccACGCUcugguccgGGCCGaCCagGCCGUCGg -3'
miRNA:   3'- -GGCGGCG--------------UGCGA--------CCGGC-GG--CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 20413 0.75 0.083291
Target:  5'- aCGCCGaucuCGaUGGCCGCCGCCGcCa -3'
miRNA:   3'- gGCGGCgu--GCgACCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 43563 0.76 0.073041
Target:  5'- cCCGCCGCAC-CU-GCUGCCGCCG-Ca -3'
miRNA:   3'- -GGCGGCGUGcGAcCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 22373 0.84 0.01763
Target:  5'- gCCGCCGCGCGggccUUGGCCGCCGCCaggCGg -3'
miRNA:   3'- -GGCGGCGUGC----GACCGGCGGCGGca-GC- -5'
18982 3' -65 NC_004684.1 + 26659 0.74 0.087765
Target:  5'- aCCGCCGCGCGCcagGGCgCGCCGgaaCG-CGu -3'
miRNA:   3'- -GGCGGCGUGCGa--CCG-GCGGCg--GCaGC- -5'
18982 3' -65 NC_004684.1 + 65538 0.79 0.037546
Target:  5'- aCCGgCGCACGgUGGCCGCgCGCCG-Ca -3'
miRNA:   3'- -GGCgGCGUGCgACCGGCG-GCGGCaGc -5'
18982 3' -65 NC_004684.1 + 46380 0.76 0.067483
Target:  5'- gCGCCGCaacGCGCUcGGCCGCCGCgaCGUg- -3'
miRNA:   3'- gGCGGCG---UGCGA-CCGGCGGCG--GCAgc -5'
18982 3' -65 NC_004684.1 + 66610 0.74 0.091031
Target:  5'- cCCGCCGggcCGCGCUgaaggcggcccgcgaGGCCGCCGCCa--- -3'
miRNA:   3'- -GGCGGC---GUGCGA---------------CCGGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 46681 0.74 0.099968
Target:  5'- aCCGCCGC-CGU----CGCCGCCGUCGa -3'
miRNA:   3'- -GGCGGCGuGCGaccgGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 65411 0.78 0.044569
Target:  5'- cCUGCCugGCGCUGGCCguggugcacagcgagGCCGCCGUCGc -3'
miRNA:   3'- -GGCGGcgUGCGACCGG---------------CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 46837 0.78 0.051756
Target:  5'- gCGuCCGCACGCUGGacaauaCCGCCGCCucaacguaauGUCGg -3'
miRNA:   3'- gGC-GGCGUGCGACC------GGCGGCGG----------CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.