miRNA display CGI


Results 1 - 20 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 6250 1.1 0.00017
Target:  5'- aCCGCCGCACGCUGGCCGCCGCCGUCGa -3'
miRNA:   3'- -GGCGGCGUGCGACCGGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 13265 0.85 0.013808
Target:  5'- aCCGCCaGCGCGCUGGUgGCCGCCGg-- -3'
miRNA:   3'- -GGCGG-CGUGCGACCGgCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 22373 0.84 0.01763
Target:  5'- gCCGCCGCGCGggccUUGGCCGCCGCCaggCGg -3'
miRNA:   3'- -GGCGGCGUGC----GACCGGCGGCGGca-GC- -5'
18982 3' -65 NC_004684.1 + 15148 0.83 0.018613
Target:  5'- aCGCCaGCGCGCagcUGGCCGCCGCCGcCa -3'
miRNA:   3'- gGCGG-CGUGCG---ACCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 65538 0.79 0.037546
Target:  5'- aCCGgCGCACGgUGGCCGCgCGCCG-Ca -3'
miRNA:   3'- -GGCgGCGUGCgACCGGCG-GCGGCaGc -5'
18982 3' -65 NC_004684.1 + 65411 0.78 0.044569
Target:  5'- cCUGCCugGCGCUGGCCguggugcacagcgagGCCGCCGUCGc -3'
miRNA:   3'- -GGCGGcgUGCGACCGG---------------CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 63023 0.78 0.046517
Target:  5'- gCGCCGCGCGCUGGUCGgCuUCGUCa -3'
miRNA:   3'- gGCGGCGUGCGACCGGCgGcGGCAGc -5'
18982 3' -65 NC_004684.1 + 37630 0.78 0.046517
Target:  5'- aCGCCGUcgguGCGCUGGCCaugGCCGCCcgGUCa -3'
miRNA:   3'- gGCGGCG----UGCGACCGG---CGGCGG--CAGc -5'
18982 3' -65 NC_004684.1 + 61315 0.78 0.047776
Target:  5'- aCCGCCGC-CG--GGCCGCCGCCcUCGg -3'
miRNA:   3'- -GGCGGCGuGCgaCCGGCGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 22452 0.78 0.050395
Target:  5'- aCCGCCaGCGCGaccGCCGCCGCCGcCGc -3'
miRNA:   3'- -GGCGG-CGUGCgacCGGCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 12882 0.78 0.051344
Target:  5'- gCCGCCGCcggggagccuGCGCUcGCCGCCagcggugccggugcGCCGUCGg -3'
miRNA:   3'- -GGCGGCG----------UGCGAcCGGCGG--------------CGGCAGC- -5'
18982 3' -65 NC_004684.1 + 46837 0.78 0.051756
Target:  5'- gCGuCCGCACGCUGGacaauaCCGCCGCCucaacguaauGUCGg -3'
miRNA:   3'- gGC-GGCGUGCGACC------GGCGGCGG----------CAGC- -5'
18982 3' -65 NC_004684.1 + 26408 0.77 0.053153
Target:  5'- gCCGCCaccgGCGCGCUGGCagcgggguuCGCCGCCGg-- -3'
miRNA:   3'- -GGCGG----CGUGCGACCG---------GCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 49270 0.77 0.056057
Target:  5'- gCCGCCGC-CGCc-GCCGCCGCCGa-- -3'
miRNA:   3'- -GGCGGCGuGCGacCGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 33590 0.77 0.059115
Target:  5'- aCCGCC-CGCGaguacagGGCCGCCGCCG-CGu -3'
miRNA:   3'- -GGCGGcGUGCga-----CCGGCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 9851 0.77 0.060704
Target:  5'- aCCGCCGC-CGgUGaGCUGCCGCCGg-- -3'
miRNA:   3'- -GGCGGCGuGCgAC-CGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 46380 0.76 0.067483
Target:  5'- gCGCCGCaacGCGCUcGGCCGCCGCgaCGUg- -3'
miRNA:   3'- gGCGGCG---UGCGA-CCGGCGGCG--GCAgc -5'
18982 3' -65 NC_004684.1 + 43563 0.76 0.073041
Target:  5'- cCCGCCGCAC-CU-GCUGCCGCCG-Ca -3'
miRNA:   3'- -GGCGGCGUGcGAcCGGCGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 29313 0.75 0.076987
Target:  5'- gCGCCacaGCAUGUccUGGCCGuuGCCGUCc -3'
miRNA:   3'- gGCGG---CGUGCG--ACCGGCggCGGCAGc -5'
18982 3' -65 NC_004684.1 + 24893 0.75 0.081137
Target:  5'- aUCGUgGCuACGagaUGGCCGCCGCCG-CGa -3'
miRNA:   3'- -GGCGgCG-UGCg--ACCGGCGGCGGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.