miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 448 0.69 0.214931
Target:  5'- aCCGCUGCGCGCaucgUGGCCGUggacaaccgggccagCGagGUCGg -3'
miRNA:   3'- -GGCGGCGUGCG----ACCGGCG---------------GCggCAGC- -5'
18982 3' -65 NC_004684.1 + 480 0.67 0.289367
Target:  5'- uCC-CCGUACGCggGGCCGUCGgUcUCGg -3'
miRNA:   3'- -GGcGGCGUGCGa-CCGGCGGCgGcAGC- -5'
18982 3' -65 NC_004684.1 + 565 0.66 0.324081
Target:  5'- gCUGCCGaccuCGCUGGCC-CgGuuGUCc -3'
miRNA:   3'- -GGCGGCgu--GCGACCGGcGgCggCAGc -5'
18982 3' -65 NC_004684.1 + 744 0.7 0.19026
Target:  5'- gCUGUCGUGCGCgucgguguccuuggGGUCGCCGUgcuCGUCGg -3'
miRNA:   3'- -GGCGGCGUGCGa-------------CCGGCGGCG---GCAGC- -5'
18982 3' -65 NC_004684.1 + 971 0.7 0.197872
Target:  5'- gCGCgGCGCggggaucacguGCUGGCCGUCcUCGUCGc -3'
miRNA:   3'- gGCGgCGUG-----------CGACCGGCGGcGGCAGC- -5'
18982 3' -65 NC_004684.1 + 1234 0.68 0.269976
Target:  5'- aCgGUCgGCACGCccggcauGCCGUgGCCGUCGa -3'
miRNA:   3'- -GgCGG-CGUGCGac-----CGGCGgCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 2003 0.67 0.309834
Target:  5'- -gGCCuGgGCGCUGGaCCGCC-CCGaCGu -3'
miRNA:   3'- ggCGG-CgUGCGACC-GGCGGcGGCaGC- -5'
18982 3' -65 NC_004684.1 + 2345 0.67 0.296069
Target:  5'- cCCGCCGcCGCGCUGaucagcguGgCGuuGCgGUUGg -3'
miRNA:   3'- -GGCGGC-GUGCGAC--------CgGCggCGgCAGC- -5'
18982 3' -65 NC_004684.1 + 2543 0.7 0.192611
Target:  5'- aCGCCGa--GCUGGCCGCCcaggcggGCgaUGUCGg -3'
miRNA:   3'- gGCGGCgugCGACCGGCGG-------CG--GCAGC- -5'
18982 3' -65 NC_004684.1 + 3255 0.68 0.266226
Target:  5'- aCGCUGCugGcCUGGCCGgacaucguggacgcaCUGCUGcCGg -3'
miRNA:   3'- gGCGGCGugC-GACCGGC---------------GGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 3490 0.68 0.232679
Target:  5'- -gGCCGCACcgUGGCCGCCaggacgccgcaaucGCCGaCGg -3'
miRNA:   3'- ggCGGCGUGcgACCGGCGG--------------CGGCaGC- -5'
18982 3' -65 NC_004684.1 + 3680 0.71 0.146441
Target:  5'- cCUGuuGgCACGCUGGCaggagaucgccagCGCCGCCG-CGc -3'
miRNA:   3'- -GGCggC-GUGCGACCG-------------GCGGCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 4460 0.69 0.21286
Target:  5'- gCCGCaCGUGCGCgcgaGGCCGUCGuuGg-- -3'
miRNA:   3'- -GGCG-GCGUGCGa---CCGGCGGCggCagc -5'
18982 3' -65 NC_004684.1 + 4502 0.72 0.126053
Target:  5'- cCCGCCGa--GCUGGCgGCCaCCGUgGa -3'
miRNA:   3'- -GGCGGCgugCGACCGgCGGcGGCAgC- -5'
18982 3' -65 NC_004684.1 + 5995 0.67 0.289367
Target:  5'- gCCgGUCGUGCGCgaucaGcGCCGCCGCCacccgGUCa -3'
miRNA:   3'- -GG-CGGCGUGCGa----C-CGGCGGCGG-----CAGc -5'
18982 3' -65 NC_004684.1 + 6122 0.66 0.331385
Target:  5'- -gGCCGCgagGCGCUGGCgGCCuaaagGCCa--- -3'
miRNA:   3'- ggCGGCG---UGCGACCGgCGG-----CGGcagc -5'
18982 3' -65 NC_004684.1 + 6250 1.1 0.00017
Target:  5'- aCCGCCGCACGCUGGCCGCCGCCGUCGa -3'
miRNA:   3'- -GGCGGCGUGCGACCGGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 6309 0.67 0.289367
Target:  5'- -gGCCGCccaGCUGGCCGagaucgCGCCGg-- -3'
miRNA:   3'- ggCGGCGug-CGACCGGCg-----GCGGCagc -5'
18982 3' -65 NC_004684.1 + 6461 0.69 0.223387
Target:  5'- aCGCUGCgcaacGCGCaGGCCaucGCCGCCGa-- -3'
miRNA:   3'- gGCGGCG-----UGCGaCCGG---CGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 6529 0.66 0.331385
Target:  5'- gCGCCucggccaaGCGCGaaGGCguucaCGCCGCCGcCGa -3'
miRNA:   3'- gGCGG--------CGUGCgaCCG-----GCGGCGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.