miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 6724 0.68 0.244026
Target:  5'- -aGCCGaagaaaggcgacacCugGCUGGcCCGgaGCCGUCGg -3'
miRNA:   3'- ggCGGC--------------GugCGACC-GGCggCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 7501 0.73 0.11976
Target:  5'- uUGUCuaCGCGCUGGCCGCCGCgCG-CGu -3'
miRNA:   3'- gGCGGc-GUGCGACCGGCGGCG-GCaGC- -5'
18982 3' -65 NC_004684.1 + 7707 0.71 0.150561
Target:  5'- gCCGUCGCcgugGCGCUGGCCGUgaGCCa--- -3'
miRNA:   3'- -GGCGGCG----UGCGACCGGCGg-CGGcagc -5'
18982 3' -65 NC_004684.1 + 8142 0.68 0.251646
Target:  5'- -aGCCGCacccugcugGCGCUGGaggaCCGCCaGCCGaCGu -3'
miRNA:   3'- ggCGGCG---------UGCGACC----GGCGG-CGGCaGC- -5'
18982 3' -65 NC_004684.1 + 8829 0.66 0.326988
Target:  5'- cUCGCCGgGCGCggcGGCgaacaucgggaucagCGCCGCCauggaguccucGUCGu -3'
miRNA:   3'- -GGCGGCgUGCGa--CCG---------------GCGGCGG-----------CAGC- -5'
18982 3' -65 NC_004684.1 + 9498 0.7 0.197872
Target:  5'- gCUGUC-CAgGCUGGCCugaucGCUGUCGUCGg -3'
miRNA:   3'- -GGCGGcGUgCGACCGG-----CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 9755 0.66 0.354019
Target:  5'- gCCGuacaCCGCGCGCUucaCCGCCGCCc--- -3'
miRNA:   3'- -GGC----GGCGUGCGAcc-GGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 9851 0.77 0.060704
Target:  5'- aCCGCCGC-CGgUGaGCUGCCGCCGg-- -3'
miRNA:   3'- -GGCGGCGuGCgAC-CGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 9882 0.7 0.193084
Target:  5'- aCGCCGCGCaggaGCaGGCCGCCGaCGa-- -3'
miRNA:   3'- gGCGGCGUG----CGaCCGGCGGCgGCagc -5'
18982 3' -65 NC_004684.1 + 10157 0.71 0.146812
Target:  5'- gCCaGCCGC-CGCUGGCCaCCGCgcUCGa -3'
miRNA:   3'- -GG-CGGCGuGCGACCGGcGGCGgcAGC- -5'
18982 3' -65 NC_004684.1 + 10325 0.73 0.11976
Target:  5'- gCGCCGCaACGCaGGCCGCCaucgaccccGCCGg-- -3'
miRNA:   3'- gGCGGCG-UGCGaCCGGCGG---------CGGCagc -5'
18982 3' -65 NC_004684.1 + 10496 0.7 0.188398
Target:  5'- cCCgGCCG-ACGCacugGGCCGCCGaCgGUCa -3'
miRNA:   3'- -GG-CGGCgUGCGa---CCGGCGGC-GgCAGc -5'
18982 3' -65 NC_004684.1 + 10821 0.67 0.296069
Target:  5'- gCGCCGCuCGaucucgucggcCUGGCUGCCcuGCCGguugCGa -3'
miRNA:   3'- gGCGGCGuGC-----------GACCGGCGG--CGGCa---GC- -5'
18982 3' -65 NC_004684.1 + 10890 0.72 0.143147
Target:  5'- gCCGCCGgAUGCcgcuacgGuGCCGaCGCCGUCGc -3'
miRNA:   3'- -GGCGGCgUGCGa------C-CGGCgGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 11603 0.7 0.179325
Target:  5'- gCGCCuggacgacgGCACcgaGCUGGCCGUCGgccgccugaCCGUCGg -3'
miRNA:   3'- gGCGG---------CGUG---CGACCGGCGGC---------GGCAGC- -5'
18982 3' -65 NC_004684.1 + 11740 0.72 0.132651
Target:  5'- gCCGCCguGCugGCgUGGCCGauGCCGaCGg -3'
miRNA:   3'- -GGCGG--CGugCG-ACCGGCggCGGCaGC- -5'
18982 3' -65 NC_004684.1 + 11935 0.69 0.228814
Target:  5'- gCCGuCCGCugGCcaUGGUCGCCaGCCu--- -3'
miRNA:   3'- -GGC-GGCGugCG--ACCGGCGG-CGGcagc -5'
18982 3' -65 NC_004684.1 + 12097 0.68 0.250461
Target:  5'- aCCGCCGC-CGCgaaguccugcggGGUCaugccgucgguGCCGCCGgUCGc -3'
miRNA:   3'- -GGCGGCGuGCGa-----------CCGG-----------CGGCGGC-AGC- -5'
18982 3' -65 NC_004684.1 + 12175 0.67 0.309834
Target:  5'- gCCGCCGCGCG--GGCCaGCaCcUCGUCGc -3'
miRNA:   3'- -GGCGGCGUGCgaCCGG-CG-GcGGCAGC- -5'
18982 3' -65 NC_004684.1 + 12352 0.67 0.294046
Target:  5'- -gGCCucgaugauggucauGUACGUgaccGGaUCGCCGCCGUCGg -3'
miRNA:   3'- ggCGG--------------CGUGCGa---CC-GGCGGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.