miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 67115 0.69 0.228814
Target:  5'- gUGCCagguguGCACGaaGGCC-UCGCCGUCGg -3'
miRNA:   3'- gGCGG------CGUGCgaCCGGcGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 66952 0.66 0.331385
Target:  5'- gCGCUGaCGUGCUGGCCaGC-GCgGUCGa -3'
miRNA:   3'- gGCGGC-GUGCGACCGG-CGgCGgCAGC- -5'
18982 3' -65 NC_004684.1 + 66794 0.71 0.158322
Target:  5'- uUCGCCGCgcaGCGCaaGaCCGCCGCCGg-- -3'
miRNA:   3'- -GGCGGCG---UGCGacC-GGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 66749 0.71 0.158322
Target:  5'- aCCGCCGgugAC-CgGGCCGCCGCCGagGc -3'
miRNA:   3'- -GGCGGCg--UGcGaCCGGCGGCGGCagC- -5'
18982 3' -65 NC_004684.1 + 66610 0.74 0.091031
Target:  5'- cCCGCCGggcCGCGCUgaaggcggcccgcgaGGCCGCCGCCa--- -3'
miRNA:   3'- -GGCGGC---GUGCGA---------------CCGGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 66421 0.71 0.152085
Target:  5'- cCCGgCGUcaccgggacguucgaGCGCUacuacGcGCCGCUGCCGUCGg -3'
miRNA:   3'- -GGCgGCG---------------UGCGA-----C-CGGCGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 66119 0.7 0.183812
Target:  5'- aCGCgUGCugGCgaagUGGUCGCCGgUGUCGu -3'
miRNA:   3'- gGCG-GCGugCG----ACCGGCGGCgGCAGC- -5'
18982 3' -65 NC_004684.1 + 66112 0.69 0.202763
Target:  5'- aCGCCaaCACcCUGGCCgacgccaagGCCGCCGUUGc -3'
miRNA:   3'- gGCGGc-GUGcGACCGG---------CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 65890 0.7 0.174936
Target:  5'- gCGCgGCGCGCagguUGGCCaccaggGCCGCCG-Ca -3'
miRNA:   3'- gGCGgCGUGCG----ACCGG------CGGCGGCaGc -5'
18982 3' -65 NC_004684.1 + 65854 0.69 0.228814
Target:  5'- aCCGCaUGCgaGCGCgGGUCGCgucguCGCCGUUGa -3'
miRNA:   3'- -GGCG-GCG--UGCGaCCGGCG-----GCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 65768 0.74 0.102594
Target:  5'- gCCGCCGCGCGCcggUGGgCGCgCGCaCGgCGa -3'
miRNA:   3'- -GGCGGCGUGCG---ACCgGCG-GCG-GCaGC- -5'
18982 3' -65 NC_004684.1 + 65714 0.68 0.23773
Target:  5'- -aGCUGCGCGCguggcUGGacgccaaccaggaCGCCGCCGUgCGg -3'
miRNA:   3'- ggCGGCGUGCG-----ACCg------------GCGGCGGCA-GC- -5'
18982 3' -65 NC_004684.1 + 65538 0.79 0.037546
Target:  5'- aCCGgCGCACGgUGGCCGCgCGCCG-Ca -3'
miRNA:   3'- -GGCgGCGUGCgACCGGCG-GCGGCaGc -5'
18982 3' -65 NC_004684.1 + 65448 0.66 0.33881
Target:  5'- aCCGUCGCccUGgUGGCCcuggggGCCGCCaUCGu -3'
miRNA:   3'- -GGCGGCGu-GCgACCGG------CGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 65411 0.78 0.044569
Target:  5'- cCUGCCugGCGCUGGCCguggugcacagcgagGCCGCCGUCGc -3'
miRNA:   3'- -GGCGGcgUGCGACCGG---------------CGGCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 65081 0.68 0.263749
Target:  5'- aCGCCGCugGC-GaGCCGCagacccgcguCGCgGUCa -3'
miRNA:   3'- gGCGGCGugCGaC-CGGCG----------GCGgCAGc -5'
18982 3' -65 NC_004684.1 + 65010 0.71 0.150561
Target:  5'- aCCGCCGcCAC-CUgGGUCGCCGCCa--- -3'
miRNA:   3'- -GGCGGC-GUGcGA-CCGGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 64697 0.66 0.324081
Target:  5'- gUCGa-GCAUGUUGGCgGCCGCCa--- -3'
miRNA:   3'- -GGCggCGUGCGACCGgCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 64290 0.69 0.202763
Target:  5'- aCCGCgCGCaguGCGCccUGGCCGUCGUgGUgGu -3'
miRNA:   3'- -GGCG-GCG---UGCG--ACCGGCGGCGgCAgC- -5'
18982 3' -65 NC_004684.1 + 63527 0.66 0.33657
Target:  5'- gCGUCGCagcucgcgggcgugGCGCUcggccuccucGGCCGCUGCCaUCa -3'
miRNA:   3'- gGCGGCG--------------UGCGA----------CCGGCGGCGGcAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.