Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18983 | 5' | -61.7 | NC_004684.1 | + | 43955 | 0.67 | 0.355169 |
Target: 5'- cUCGCCGUCG-AGGCCgagcaucaGCCGUgCGc -3' miRNA: 3'- uAGUGGCAGCuUCCGGac------CGGCGgGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 47910 | 0.67 | 0.363322 |
Target: 5'- -cCACgGUCGgcGGCCUcGGCCaCCUu -3' miRNA: 3'- uaGUGgCAGCuuCCGGA-CCGGcGGGu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 22626 | 0.67 | 0.371605 |
Target: 5'- -gCGCUGUgGGAGGCC--GCCGCCa- -3' miRNA: 3'- uaGUGGCAgCUUCCGGacCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 21825 | 0.67 | 0.380015 |
Target: 5'- cUCAUgGgcgCGAucagccGGGCauccaUGGCCGCCCGc -3' miRNA: 3'- uAGUGgCa--GCU------UCCGg----ACCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 16549 | 0.67 | 0.371605 |
Target: 5'- uUCAUCGUUauGGGCCUGGgCGUCa- -3' miRNA: 3'- uAGUGGCAGcuUCCGGACCgGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 45236 | 0.67 | 0.371604 |
Target: 5'- -aCGCCGUCGAcuucgccgAGGCCUGGgUGUa-- -3' miRNA: 3'- uaGUGGCAGCU--------UCCGGACCgGCGggu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 6122 | 0.67 | 0.380014 |
Target: 5'- --gGCCG-CG-AGGCgCUGGCgGCCUAa -3' miRNA: 3'- uagUGGCaGCuUCCG-GACCGgCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 67026 | 0.67 | 0.346349 |
Target: 5'- gAUCG-CGcCGGAGGCCuucgccgagguugUGGCCGCCa- -3' miRNA: 3'- -UAGUgGCaGCUUCCGG-------------ACCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 25508 | 0.67 | 0.380014 |
Target: 5'- -gCAagGUCGGAGGCaccccauugguaCUGGCCGCCg- -3' miRNA: 3'- uaGUggCAGCUUCCG------------GACCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 60174 | 0.67 | 0.380014 |
Target: 5'- gGUgGCCcggUGAAGGCCcgcacgGGCCGCCgGg -3' miRNA: 3'- -UAgUGGca-GCUUCCGGa-----CCGGCGGgU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 467 | 0.67 | 0.339252 |
Target: 5'- --gGCCGUCGGucucGGCCaGGUCGCgCAu -3' miRNA: 3'- uagUGGCAGCUu---CCGGaCCGGCGgGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 49657 | 0.67 | 0.363322 |
Target: 5'- --gACCGcaggCGAAGGCCacGCCaGCCCGa -3' miRNA: 3'- uagUGGCa---GCUUCCGGacCGG-CGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 4817 | 0.67 | 0.363322 |
Target: 5'- uGUgGCCGUgCGcGAGGuCCUGGCCGUagcaggCCAg -3' miRNA: 3'- -UAgUGGCA-GC-UUCC-GGACCGGCG------GGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 63857 | 0.67 | 0.371604 |
Target: 5'- uUCACCcugcUGucGGCCgcaaacuagUGGCCGCCCGg -3' miRNA: 3'- uAGUGGca--GCuuCCGG---------ACCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 23660 | 0.68 | 0.33149 |
Target: 5'- cUgACCGgguacacCGAcGGCCUGGUCGgCCCGg -3' miRNA: 3'- uAgUGGCa------GCUuCCGGACCGGC-GGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 5682 | 0.68 | 0.316359 |
Target: 5'- gGUCGCgGUggCGAAGGCCuccaUGGCgauuucgcgcgCGCCCAc -3' miRNA: 3'- -UAGUGgCA--GCUUCCGG----ACCG-----------GCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 6041 | 0.68 | 0.316359 |
Target: 5'- cUCACCGgCGc-GGCCagguUGGaCCGCCCGg -3' miRNA: 3'- uAGUGGCaGCuuCCGG----ACC-GGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 57485 | 0.68 | 0.319344 |
Target: 5'- -cCACCGUCGAcaagcgccgcacgcaGGuGCCUGcGCCGgauCCCGa -3' miRNA: 3'- uaGUGGCAGCU---------------UC-CGGAC-CGGC---GGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 12883 | 0.68 | 0.31636 |
Target: 5'- -cCGCCGcCGggGaGCCUGcgcucGCCGCCa- -3' miRNA: 3'- uaGUGGCaGCuuC-CGGAC-----CGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 56041 | 0.68 | 0.31636 |
Target: 5'- -cCACCGU---GGGCCUggaGGCCGCCg- -3' miRNA: 3'- uaGUGGCAgcuUCCGGA---CCGGCGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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