miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 12883 0.68 0.31636
Target:  5'- -cCGCCGcCGggGaGCCUGcgcucGCCGCCa- -3'
miRNA:   3'- uaGUGGCaGCuuC-CGGAC-----CGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 15063 0.7 0.241875
Target:  5'- -aCGCCGgaugaggUCGAcGGCCuuaucggcgcggUGGCCGCCCu -3'
miRNA:   3'- uaGUGGC-------AGCUuCCGG------------ACCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 15252 0.69 0.287678
Target:  5'- gGUUA-CGUCGAuGGCCUGGCCaacaCCCu -3'
miRNA:   3'- -UAGUgGCAGCUuCCGGACCGGc---GGGu -5'
18983 5' -61.7 NC_004684.1 + 15463 0.7 0.251018
Target:  5'- uAUCGCCGUCGAacucgacaacGGGuucgccacCCUggaguuccuggacaaGGCCGCCCGg -3'
miRNA:   3'- -UAGUGGCAGCU----------UCC--------GGA---------------CCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 16297 0.66 0.388551
Target:  5'- uUCACUGUCGuaucAGaCCgGGCCGCCg- -3'
miRNA:   3'- uAGUGGCAGCu---UCcGGaCCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 16549 0.67 0.371605
Target:  5'- uUCAUCGUUauGGGCCUGGgCGUCa- -3'
miRNA:   3'- uAGUGGCAGcuUCCGGACCgGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 18725 0.71 0.193216
Target:  5'- cGUCACCGggCaGAGGUccaccgCUGGUCGCCCAg -3'
miRNA:   3'- -UAGUGGCa-GcUUCCG------GACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 19550 0.67 0.355169
Target:  5'- -gCGCCGggCGGugccaggucuccGGGCCUGGCgucgugcaccUGCCCAg -3'
miRNA:   3'- uaGUGGCa-GCU------------UCCGGACCG----------GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 19680 0.7 0.219399
Target:  5'- -cUACCGgcgCGGcggcaAGGCCUGGCCGagCCAa -3'
miRNA:   3'- uaGUGGCa--GCU-----UCCGGACCGGCg-GGU- -5'
18983 5' -61.7 NC_004684.1 + 20583 0.71 0.188319
Target:  5'- gGUCACCGUCGAAGGCa----CGCUCAc -3'
miRNA:   3'- -UAGUGGCAGCUUCCGgaccgGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 21825 0.67 0.380015
Target:  5'- cUCAUgGgcgCGAucagccGGGCauccaUGGCCGCCCGc -3'
miRNA:   3'- uAGUGgCa--GCU------UCCGg----ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 22372 0.73 0.148974
Target:  5'- -cCGCCG-CGcGGGCCuUGGCCGCCg- -3'
miRNA:   3'- uaGUGGCaGCuUCCGG-ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 22626 0.67 0.371605
Target:  5'- -gCGCUGUgGGAGGCC--GCCGCCa- -3'
miRNA:   3'- uaGUGGCAgCUUCCGGacCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 23419 0.68 0.331489
Target:  5'- uUCcacuCCG-CGAuGGCCUGGCgGCCUu -3'
miRNA:   3'- uAGu---GGCaGCUuCCGGACCGgCGGGu -5'
18983 5' -61.7 NC_004684.1 + 23660 0.68 0.33149
Target:  5'- cUgACCGgguacacCGAcGGCCUGGUCGgCCCGg -3'
miRNA:   3'- uAgUGGCa------GCUuCCGGACCGGC-GGGU- -5'
18983 5' -61.7 NC_004684.1 + 24723 0.78 0.057583
Target:  5'- -gCGCCGgaacgCGuagacguuGGCCUGGCCGCCCAu -3'
miRNA:   3'- uaGUGGCa----GCuu------CCGGACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 25508 0.67 0.380014
Target:  5'- -gCAagGUCGGAGGCaccccauugguaCUGGCCGCCg- -3'
miRNA:   3'- uaGUggCAGCUUCCG------------GACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 25941 0.71 0.20858
Target:  5'- --gGCCGUUGAacAGGCCgccgagcaucUGGCCGCCg- -3'
miRNA:   3'- uagUGGCAGCU--UCCGG----------ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 26360 0.66 0.414903
Target:  5'- gGUCACCGaaUCcuuGAGGCCUuccaGGCCcGCCUg -3'
miRNA:   3'- -UAGUGGC--AGc--UUCCGGA----CCGG-CGGGu -5'
18983 5' -61.7 NC_004684.1 + 26641 0.66 0.397212
Target:  5'- -gCGCCGgaacgCGuacaccccGGCCUGaCCGCCCAg -3'
miRNA:   3'- uaGUGGCa----GCuu------CCGGACcGGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.