miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 467 0.67 0.339252
Target:  5'- --gGCCGUCGGucucGGCCaGGUCGCgCAu -3'
miRNA:   3'- uagUGGCAGCUu---CCGGaCCGGCGgGU- -5'
18983 5' -61.7 NC_004684.1 + 708 0.66 0.414903
Target:  5'- -cCGCCGgUGGAcGGCCUGG-CGCuCCAa -3'
miRNA:   3'- uaGUGGCaGCUU-CCGGACCgGCG-GGU- -5'
18983 5' -61.7 NC_004684.1 + 718 0.73 0.13401
Target:  5'- gGUCGCCGugcUCGucGGCCaGGUCGUCCAg -3'
miRNA:   3'- -UAGUGGC---AGCuuCCGGaCCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 820 0.67 0.380014
Target:  5'- cGUCGgugUCGUCGggGuaguuggagcGCCaGGCCGUCCAc -3'
miRNA:   3'- -UAGU---GGCAGCuuC----------CGGaCCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 1225 0.69 0.254754
Target:  5'- cGUCgGCC-UCGgcGGCCUGGUcgguCGCCCGg -3'
miRNA:   3'- -UAG-UGGcAGCuuCCGGACCG----GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 4817 0.67 0.363322
Target:  5'- uGUgGCCGUgCGcGAGGuCCUGGCCGUagcaggCCAg -3'
miRNA:   3'- -UAgUGGCA-GC-UUCC-GGACCGGCG------GGU- -5'
18983 5' -61.7 NC_004684.1 + 5682 0.68 0.316359
Target:  5'- gGUCGCgGUggCGAAGGCCuccaUGGCgauuucgcgcgCGCCCAc -3'
miRNA:   3'- -UAGUGgCA--GCUUCCGG----ACCG-----------GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 6013 0.66 0.423927
Target:  5'- -cCAUCGgacgCGguGGCCUuuaGGCCGCCa- -3'
miRNA:   3'- uaGUGGCa---GCuuCCGGA---CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 6041 0.68 0.316359
Target:  5'- cUCACCGgCGc-GGCCagguUGGaCCGCCCGg -3'
miRNA:   3'- uAGUGGCaGCuuCCGG----ACC-GGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 6122 0.67 0.380014
Target:  5'- --gGCCG-CG-AGGCgCUGGCgGCCUAa -3'
miRNA:   3'- uagUGGCaGCuUCCG-GACCGgCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 6327 1.06 0.000459
Target:  5'- cAUCACCGUCGAAGGCCUGGCCGCCCAg -3'
miRNA:   3'- -UAGUGGCAGCUUCCGGACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 6615 0.66 0.405997
Target:  5'- cUCACCGgaaccGGCCUGGCCaggGCCg- -3'
miRNA:   3'- uAGUGGCagcuuCCGGACCGG---CGGgu -5'
18983 5' -61.7 NC_004684.1 + 7706 0.68 0.301756
Target:  5'- --gGCCGUCGccguGGCgCUGGCCGUgagCCAc -3'
miRNA:   3'- uagUGGCAGCuu--CCG-GACCGGCG---GGU- -5'
18983 5' -61.7 NC_004684.1 + 9125 0.66 0.42757
Target:  5'- cAUCACCGcCGAggccauggucaagauGcucGGCCUGGCCGacgacaCCGu -3'
miRNA:   3'- -UAGUGGCaGCU---------------U---CCGGACCGGCg-----GGU- -5'
18983 5' -61.7 NC_004684.1 + 9782 0.66 0.405997
Target:  5'- cUCGCCGUCGAuGGuUUUGGUCaGCUCGc -3'
miRNA:   3'- uAGUGGCAGCUuCC-GGACCGG-CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 10802 0.66 0.405997
Target:  5'- -gCACCGUagcggcaucCGgcGGCUgGGCCGCaCCGa -3'
miRNA:   3'- uaGUGGCA---------GCuuCCGGaCCGGCG-GGU- -5'
18983 5' -61.7 NC_004684.1 + 10821 0.77 0.069885
Target:  5'- -gCGCCGcUCGAucucgucGGCCUGGCUGCCCu -3'
miRNA:   3'- uaGUGGC-AGCUu------CCGGACCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 11154 0.8 0.044817
Target:  5'- -gCGCCGUCGguGGaCCUGGCCGCCa- -3'
miRNA:   3'- uaGUGGCAGCuuCC-GGACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 11522 0.7 0.213931
Target:  5'- -gCACCGcUCGGuGGGCCUGGgccacaucgacCCGCCCc -3'
miRNA:   3'- uaGUGGC-AGCU-UCCGGACC-----------GGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 12842 0.68 0.308992
Target:  5'- --uGCCGacguggucgCGGAGGCCgaGGCCGCCa- -3'
miRNA:   3'- uagUGGCa--------GCUUCCGGa-CCGGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.