miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 41660 0.68 0.294652
Target:  5'- -gCGgCGUaCGAAGGCCgGGCCGaCCUc -3'
miRNA:   3'- uaGUgGCA-GCUUCCGGaCCGGC-GGGu -5'
18983 5' -61.7 NC_004684.1 + 19680 0.7 0.219399
Target:  5'- -cUACCGgcgCGGcggcaAGGCCUGGCCGagCCAa -3'
miRNA:   3'- uaGUGGCa--GCU-----UCCGGACCGGCg-GGU- -5'
18983 5' -61.7 NC_004684.1 + 15063 0.7 0.241875
Target:  5'- -aCGCCGgaugaggUCGAcGGCCuuaucggcgcggUGGCCGCCCu -3'
miRNA:   3'- uaGUGGC-------AGCUuCCGG------------ACCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 15463 0.7 0.251018
Target:  5'- uAUCGCCGUCGAacucgacaacGGGuucgccacCCUggaguuccuggacaaGGCCGCCCGg -3'
miRNA:   3'- -UAGUGGCAGCU----------UCC--------GGA---------------CCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 1225 0.69 0.254754
Target:  5'- cGUCgGCC-UCGgcGGCCUGGUcgguCGCCCGg -3'
miRNA:   3'- -UAG-UGGcAGCuuCCGGACCG----GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 50021 0.69 0.274122
Target:  5'- -gCACCGUCGgcGGCagcgUGGCCgguGCCUg -3'
miRNA:   3'- uaGUGGCAGCuuCCGg---ACCGG---CGGGu -5'
18983 5' -61.7 NC_004684.1 + 40632 0.69 0.278808
Target:  5'- -cCGCCGcgcggccgacgaacUUGggGGCCUGGCCccGCCa- -3'
miRNA:   3'- uaGUGGC--------------AGCuuCCGGACCGG--CGGgu -5'
18983 5' -61.7 NC_004684.1 + 15252 0.69 0.287678
Target:  5'- gGUUA-CGUCGAuGGCCUGGCCaacaCCCu -3'
miRNA:   3'- -UAGUgGCAGCUuCCGGACCGGc---GGGu -5'
18983 5' -61.7 NC_004684.1 + 30176 0.69 0.287678
Target:  5'- -aCGCCGUCGgcGGCgagCUGGUgGCCa- -3'
miRNA:   3'- uaGUGGCAGCuuCCG---GACCGgCGGgu -5'
18983 5' -61.7 NC_004684.1 + 11522 0.7 0.213931
Target:  5'- -gCACCGcUCGGuGGGCCUGGgccacaucgacCCGCCCc -3'
miRNA:   3'- uaGUGGC-AGCU-UCCGGACC-----------GGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 49113 0.71 0.20858
Target:  5'- gGUCGCCGUCGGcgucGGCCUGGaacguaccgUCGCCg- -3'
miRNA:   3'- -UAGUGGCAGCUu---CCGGACC---------GGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 58389 0.71 0.20858
Target:  5'- -gCACCGcgcgUGGAGGCCUuggcccGGCCGCCgGa -3'
miRNA:   3'- uaGUGGCa---GCUUCCGGA------CCGGCGGgU- -5'
18983 5' -61.7 NC_004684.1 + 11154 0.8 0.044817
Target:  5'- -gCGCCGUCGguGGaCCUGGCCGCCa- -3'
miRNA:   3'- uaGUGGCAGCuuCC-GGACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 37600 0.74 0.114145
Target:  5'- -gUACCGU-GcGGGCCcGGCCGCCCAu -3'
miRNA:   3'- uaGUGGCAgCuUCCGGaCCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 39326 0.74 0.123708
Target:  5'- aGUUGCCG-CGcccAGGCCgguUGGCCGCCCAc -3'
miRNA:   3'- -UAGUGGCaGCu--UCCGG---ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 65878 0.73 0.142814
Target:  5'- cGUCGCCGUUGAGcgcggcgcgcagguuGGCCaccagGGCCGCCgCAc -3'
miRNA:   3'- -UAGUGGCAGCUU---------------CCGGa----CCGGCGG-GU- -5'
18983 5' -61.7 NC_004684.1 + 45491 0.73 0.152947
Target:  5'- gGUCGCaCGUCGGGcauaccgcgauGGCCUGGCCcuGCUCAu -3'
miRNA:   3'- -UAGUG-GCAGCUU-----------CCGGACCGG--CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 47168 0.72 0.174279
Target:  5'- -gCACCGUagCGgcGGCCagGGCCGCCg- -3'
miRNA:   3'- uaGUGGCA--GCuuCCGGa-CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 58315 0.72 0.178853
Target:  5'- cUCACCGgCGAcgccGGGUCaUGGCgCGCCCGg -3'
miRNA:   3'- uAGUGGCaGCU----UCCGG-ACCG-GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 20583 0.71 0.188319
Target:  5'- gGUCACCGUCGAAGGCa----CGCUCAc -3'
miRNA:   3'- -UAGUGGCAGCUUCCGgaccgGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.