Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18983 | 5' | -61.7 | NC_004684.1 | + | 6327 | 1.06 | 0.000459 |
Target: 5'- cAUCACCGUCGAAGGCCUGGCCGCCCAg -3' miRNA: 3'- -UAGUGGCAGCUUCCGGACCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 40458 | 0.68 | 0.294651 |
Target: 5'- -cCACCGcCGAggcccccaAGGCCaaGGCCGCCg- -3' miRNA: 3'- uaGUGGCaGCU--------UCCGGa-CCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 65452 | 0.68 | 0.308992 |
Target: 5'- gAUgACCGUCGcccugguGGCCcugggGGCCGCCa- -3' miRNA: 3'- -UAgUGGCAGCuu-----CCGGa----CCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 27411 | 0.66 | 0.433068 |
Target: 5'- -cCGCCGUCGucaaagCUGGCCGCaCCGa -3' miRNA: 3'- uaGUGGCAGCuuccg-GACCGGCG-GGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 63002 | 0.75 | 0.105276 |
Target: 5'- cGUCACCGgCcAGGGCCUGGCcCGCCg- -3' miRNA: 3'- -UAGUGGCaGcUUCCGGACCG-GCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 47273 | 0.74 | 0.127057 |
Target: 5'- uUCGCCGcgcagCGgcGGcCCUGGCCGCCg- -3' miRNA: 3'- uAGUGGCa----GCuuCC-GGACCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 50375 | 0.73 | 0.145096 |
Target: 5'- aGUCGCCGUCG--GGCCUGGCgcUGgCCAg -3' miRNA: 3'- -UAGUGGCAGCuuCCGGACCG--GCgGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 22372 | 0.73 | 0.148974 |
Target: 5'- -cCGCCG-CGcGGGCCuUGGCCGCCg- -3' miRNA: 3'- uaGUGGCaGCuUCCGG-ACCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 25941 | 0.71 | 0.20858 |
Target: 5'- --gGCCGUUGAacAGGCCgccgagcaucUGGCCGCCg- -3' miRNA: 3'- uagUGGCAGCU--UCCGG----------ACCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 36755 | 0.69 | 0.280835 |
Target: 5'- -cCGCCGUCGAuGGUggUGGCCuCCCAg -3' miRNA: 3'- uaGUGGCAGCUuCCGg-ACCGGcGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 59543 | 0.7 | 0.251018 |
Target: 5'- cAUCGCCGcCGAccggcgcacaccgguGGGCaaGGCCGCCa- -3' miRNA: 3'- -UAGUGGCaGCU---------------UCCGgaCCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 33258 | 0.71 | 0.20858 |
Target: 5'- cUUGCCGaggUCGAGGGCCUGcGUacugaCGCCCAu -3' miRNA: 3'- uAGUGGC---AGCUUCCGGAC-CG-----GCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 24723 | 0.78 | 0.057583 |
Target: 5'- -gCGCCGgaacgCGuagacguuGGCCUGGCCGCCCAu -3' miRNA: 3'- uaGUGGCa----GCuu------CCGGACCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 57365 | 0.69 | 0.25917 |
Target: 5'- cUCGCCGUCacaggccgagcuguGcGGGCCgacgGuGCCGCCCGc -3' miRNA: 3'- uAGUGGCAG--------------CuUCCGGa---C-CGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 10821 | 0.77 | 0.069885 |
Target: 5'- -gCGCCGcUCGAucucgucGGCCUGGCUGCCCu -3' miRNA: 3'- uaGUGGC-AGCUu------CCGGACCGGCGGGu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 18725 | 0.71 | 0.193216 |
Target: 5'- cGUCACCGggCaGAGGUccaccgCUGGUCGCCCAg -3' miRNA: 3'- -UAGUGGCa-GcUUCCG------GACCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 42592 | 0.69 | 0.267538 |
Target: 5'- -gCGCCGUUGAucgcguuGGCCUGGUCGUUgGa -3' miRNA: 3'- uaGUGGCAGCUu------CCGGACCGGCGGgU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 31306 | 0.68 | 0.294651 |
Target: 5'- cGUCACCGgCGucGGCCaGGUCGUCUu -3' miRNA: 3'- -UAGUGGCaGCuuCCGGaCCGGCGGGu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 56247 | 0.76 | 0.080182 |
Target: 5'- cGUCGCCGUCGucGGCCagGGCCacGCUCAu -3' miRNA: 3'- -UAGUGGCAGCuuCCGGa-CCGG--CGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 718 | 0.73 | 0.13401 |
Target: 5'- gGUCGCCGugcUCGucGGCCaGGUCGUCCAg -3' miRNA: 3'- -UAGUGGC---AGCuuCCGGaCCGGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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